Results 21 - 40 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 18843 | 0.67 | 0.586841 |
Target: 5'- uUGCCGCG-UUCGACCGcGugaacaacgcgugcCUCGGcGCg -3' miRNA: 3'- cAUGGCGCuAGGCUGGCuU--------------GAGCC-CG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 19111 | 0.67 | 0.611804 |
Target: 5'- cUGCCGguCGG-CCGcGCCGAGCgcaucgcCGGGCg -3' miRNA: 3'- cAUGGC--GCUaGGC-UGGCUUGa------GCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 19151 | 0.67 | 0.611804 |
Target: 5'- --uCCGCGAcaccgaUCCGACCGcaugGGC-CGuGGCg -3' miRNA: 3'- cauGGCGCU------AGGCUGGC----UUGaGC-CCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 19161 | 0.67 | 0.590088 |
Target: 5'- -gACCGUGcAUCCG-CCGGcgcgGCUCGucGGCc -3' miRNA: 3'- caUGGCGC-UAGGCuGGCU----UGAGC--CCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 20161 | 0.68 | 0.547136 |
Target: 5'- --uCCGCGccGUCCGGCucaucgacgaCGAGCgcgcCGGGCg -3' miRNA: 3'- cauGGCGC--UAGGCUG----------GCUUGa---GCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 20556 | 0.69 | 0.458824 |
Target: 5'- -cGCCGCGAcgcucgugcccggccUgCCGGCCGuGCcgaCGGGCa -3' miRNA: 3'- caUGGCGCU---------------A-GGCUGGCuUGa--GCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 20642 | 0.67 | 0.568511 |
Target: 5'- uGUGCU-CGAUCCGGCagaaGGugACaUCGGGCu -3' miRNA: 3'- -CAUGGcGCUAGGCUGg---CU--UG-AGCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 21071 | 0.67 | 0.568511 |
Target: 5'- -gGCCGCGcAUCCuGCuCGAACgacacaaggugUGGGCg -3' miRNA: 3'- caUGGCGC-UAGGcUG-GCUUGa----------GCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 21258 | 0.66 | 0.666232 |
Target: 5'- -aGCCGCGcagugCUG-CUcuuggGGGCUCGGGCa -3' miRNA: 3'- caUGGCGCua---GGCuGG-----CUUGAGCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 21400 | 0.71 | 0.346398 |
Target: 5'- cUGCCGCaggCCGGCCu-GCUCGGcGCa -3' miRNA: 3'- cAUGGCGcuaGGCUGGcuUGAGCC-CG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 21808 | 0.74 | 0.251242 |
Target: 5'- --cCCGCGAUCacaGACCGGGCUCaucgauuGGCg -3' miRNA: 3'- cauGGCGCUAGg--CUGGCUUGAGc------CCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 22132 | 0.66 | 0.655369 |
Target: 5'- -aAgCGCGAUC--GCCGGACg-GGGCg -3' miRNA: 3'- caUgGCGCUAGgcUGGCUUGagCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 23017 | 0.66 | 0.644485 |
Target: 5'- -gAUCGCGGUauGACCGAcuauCUCGGccGCa -3' miRNA: 3'- caUGGCGCUAggCUGGCUu---GAGCC--CG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 23797 | 0.66 | 0.665146 |
Target: 5'- -gACCGcCGAUgCGACgcgcgCGAgccaaucGCUCGGGUu -3' miRNA: 3'- caUGGC-GCUAgGCUG-----GCU-------UGAGCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 24084 | 0.66 | 0.633589 |
Target: 5'- --gUCGacCGAUCCGGCCGGcggcggcuacguGC-CGGGCu -3' miRNA: 3'- cauGGC--GCUAGGCUGGCU------------UGaGCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 24570 | 0.66 | 0.633589 |
Target: 5'- -cGCCaCGGUCgGcacGCCGAAUaucaugUCGGGCg -3' miRNA: 3'- caUGGcGCUAGgC---UGGCUUG------AGCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 25056 | 0.66 | 0.665146 |
Target: 5'- -aACaCGaCGAUCCcgacgucGACCGGcaAUUCGGGUg -3' miRNA: 3'- caUG-GC-GCUAGG-------CUGGCU--UGAGCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 25103 | 0.7 | 0.407406 |
Target: 5'- aUACCGCGAUCUGcgaaacGCUGAugUUGaGGUu -3' miRNA: 3'- cAUGGCGCUAGGC------UGGCUugAGC-CCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 25227 | 0.66 | 0.666232 |
Target: 5'- -cGCCGUgccGAUcCCGGCCGAcgaauccgucacGCUCGG-Cg -3' miRNA: 3'- caUGGCG---CUA-GGCUGGCU------------UGAGCCcG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 25317 | 0.66 | 0.677063 |
Target: 5'- -gACCGC--UUCGACaccauguucaCGAGcCUCGGGCa -3' miRNA: 3'- caUGGCGcuAGGCUG----------GCUU-GAGCCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home