miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24142 3' -53.9 NC_005263.2 + 20643 0.72 0.378908
Target:  5'- --cGUGGCcgcagUGGCCGCGccgcucGUCGCGGCc -3'
miRNA:   3'- cuuCGCCGa----AUUGGCGCa-----CAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 20691 0.66 0.71479
Target:  5'- -cGGCGGCgcgaaaccugcGCCGguCGUGaCGCAGCc -3'
miRNA:   3'- cuUCGCCGaau--------UGGC--GCACaGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 21103 0.69 0.540555
Target:  5'- uGGGCGGCgacgAGCC-CGg--CGCAGCg -3'
miRNA:   3'- cUUCGCCGaa--UUGGcGCacaGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 21199 0.66 0.730054
Target:  5'- --cGCGGCgcgggcgagUGGgUGCGUuucgagcgcGUCGCAGCc -3'
miRNA:   3'- cuuCGCCGa--------AUUgGCGCA---------CAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 21919 0.66 0.708195
Target:  5'- --cGCGGCc--GCCGCGcgGcCGCAGa -3'
miRNA:   3'- cuuCGCCGaauUGGCGCa-CaGCGUCg -5'
24142 3' -53.9 NC_005263.2 + 22056 0.66 0.740835
Target:  5'- ---cCGGCUguuGCCGCGacgaucccgggUGUCGUGGUg -3'
miRNA:   3'- cuucGCCGAau-UGGCGC-----------ACAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 22362 0.71 0.466108
Target:  5'- -cGGCGGCaaGAaaGCGUGUCGauCGGCg -3'
miRNA:   3'- cuUCGCCGaaUUggCGCACAGC--GUCG- -5'
24142 3' -53.9 NC_005263.2 + 22795 0.72 0.382547
Target:  5'- uGAGCGGCUUcucGACCGaCGacggaaagaucacgcUGUCGCGcGCg -3'
miRNA:   3'- cUUCGCCGAA---UUGGC-GC---------------ACAGCGU-CG- -5'
24142 3' -53.9 NC_005263.2 + 24115 0.66 0.730054
Target:  5'- --cGCGGCgccuuucgggUAGCCGCcgauuugcGUCGCGGUu -3'
miRNA:   3'- cuuCGCCGa---------AUUGGCGca------CAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 24792 0.71 0.445811
Target:  5'- -cGGCGGCUc-GCCGgGcGUCgGCGGCg -3'
miRNA:   3'- cuUCGCCGAauUGGCgCaCAG-CGUCG- -5'
24142 3' -53.9 NC_005263.2 + 24867 0.67 0.664759
Target:  5'- -cGGCGGCUacggccaggauacggGACCGCaaggcGUCGguGCa -3'
miRNA:   3'- cuUCGCCGAa--------------UUGGCGca---CAGCguCG- -5'
24142 3' -53.9 NC_005263.2 + 24942 0.66 0.762039
Target:  5'- -uGGCGGCg-GACgGCG-GUgCGCGGUu -3'
miRNA:   3'- cuUCGCCGaaUUGgCGCaCA-GCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 25019 0.72 0.406754
Target:  5'- -cGGUGGCggUGGCUgcggugGCGUGUaCGCGGCa -3'
miRNA:   3'- cuUCGCCGa-AUUGG------CGCACA-GCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 26200 0.7 0.49742
Target:  5'- --cGCGGCg--GCCGCGcGaUGCGGCg -3'
miRNA:   3'- cuuCGCCGaauUGGCGCaCaGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 26950 0.67 0.674851
Target:  5'- --cGUGGCgUAGCCGCcggGUGUCggacuGCAGUc -3'
miRNA:   3'- cuuCGCCGaAUUGGCG---CACAG-----CGUCG- -5'
24142 3' -53.9 NC_005263.2 + 27798 0.71 0.445811
Target:  5'- --cGCGGUacaucGCCGuCGUGaUCGCGGCg -3'
miRNA:   3'- cuuCGCCGaau--UGGC-GCAC-AGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 28080 0.69 0.573711
Target:  5'- --cGCGGCacgaucCCGUGUGUuggCGCGGCc -3'
miRNA:   3'- cuuCGCCGaauu--GGCGCACA---GCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 28876 0.66 0.740835
Target:  5'- aGAAGcCGGCUuucgUGAgCGCGUccgaaaGCAGCu -3'
miRNA:   3'- -CUUC-GCCGA----AUUgGCGCAcag---CGUCG- -5'
24142 3' -53.9 NC_005263.2 + 28957 0.69 0.573711
Target:  5'- --uGCGGUcgGAUCG-GUGUCGCGGa -3'
miRNA:   3'- cuuCGCCGaaUUGGCgCACAGCGUCg -5'
24142 3' -53.9 NC_005263.2 + 30243 0.67 0.65239
Target:  5'- --cGCGGCgaagcGugCGCGguaGUCGuCGGCg -3'
miRNA:   3'- cuuCGCCGaa---UugGCGCa--CAGC-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.