miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24142 3' -53.9 NC_005263.2 + 955 0.74 0.288208
Target:  5'- cGAGCGGCgacgUAGCgGCG-GUCGCcuGCg -3'
miRNA:   3'- cUUCGCCGa---AUUGgCGCaCAGCGu-CG- -5'
24142 3' -53.9 NC_005263.2 + 1171 0.68 0.641124
Target:  5'- --cGCGGCgacuuguGCCuCGUGcugCGCGGCa -3'
miRNA:   3'- cuuCGCCGaau----UGGcGCACa--GCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 1285 0.68 0.618577
Target:  5'- cGGAGCGGCgcgaaaGAUCGCGcucacGUUGCGcGCa -3'
miRNA:   3'- -CUUCGCCGaa----UUGGCGCa----CAGCGU-CG- -5'
24142 3' -53.9 NC_005263.2 + 2664 0.67 0.674851
Target:  5'- -cGGCGGCgacaccggcAGCCuGCaGUGUCGCgccGGCg -3'
miRNA:   3'- cuUCGCCGaa-------UUGG-CG-CACAGCG---UCG- -5'
24142 3' -53.9 NC_005263.2 + 2841 0.69 0.540555
Target:  5'- uGAAuGCGGCUUcGAUCaGCG--UCGCAGCg -3'
miRNA:   3'- -CUU-CGCCGAA-UUGG-CGCacAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 2886 0.67 0.663636
Target:  5'- -cAGCGGCgaggcugaugUUGGCCGagaCGUGcugCGCGGCc -3'
miRNA:   3'- cuUCGCCG----------AAUUGGC---GCACa--GCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 7346 0.7 0.486874
Target:  5'- aGGAGCGaCUUGccGCCGCcgGUGacgaUCGCGGCg -3'
miRNA:   3'- -CUUCGCcGAAU--UGGCG--CAC----AGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 8227 0.66 0.740835
Target:  5'- -cAGcCGGCgaccccGACCacgGCGUgGUCGCAGUg -3'
miRNA:   3'- cuUC-GCCGaa----UUGG---CGCA-CAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 9124 0.7 0.51881
Target:  5'- uGAAGCGGCgauuGCCGguCGcGUCGUGGUu -3'
miRNA:   3'- -CUUCGCCGaau-UGGC--GCaCAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 11795 0.68 0.62985
Target:  5'- ---aUGGCgcagGACguCGCGUGUCGCuGCa -3'
miRNA:   3'- cuucGCCGaa--UUG--GCGCACAGCGuCG- -5'
24142 3' -53.9 NC_005263.2 + 14557 0.68 0.607317
Target:  5'- gGAAGC-GCUUAgccgGCCGCGUG-C-CGGCu -3'
miRNA:   3'- -CUUCGcCGAAU----UGGCGCACaGcGUCG- -5'
24142 3' -53.9 NC_005263.2 + 15254 0.71 0.466108
Target:  5'- ---cCGGCUacauGCUGCGgcuUGUCGCGGCg -3'
miRNA:   3'- cuucGCCGAau--UGGCGC---ACAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 16358 0.71 0.455898
Target:  5'- cGAAGCGcGCg--GCCGCGUcGcUCgGCGGCg -3'
miRNA:   3'- -CUUCGC-CGaauUGGCGCA-C-AG-CGUCG- -5'
24142 3' -53.9 NC_005263.2 + 17012 0.67 0.674851
Target:  5'- cGAAGCGuucguaucGCUcgAGCaGCGcGUCGCGGCc -3'
miRNA:   3'- -CUUCGC--------CGAa-UUGgCGCaCAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 17041 0.66 0.708195
Target:  5'- -cAGCGGCUggUGGCgGCGUGaa-CGGCu -3'
miRNA:   3'- cuUCGCCGA--AUUGgCGCACagcGUCG- -5'
24142 3' -53.9 NC_005263.2 + 17383 0.69 0.570372
Target:  5'- uGAAGCugucugccGGCgcGGCCGCGcgccuggcgggcggUGUCGCAGg -3'
miRNA:   3'- -CUUCG--------CCGaaUUGGCGC--------------ACAGCGUCg -5'
24142 3' -53.9 NC_005263.2 + 17814 0.69 0.529642
Target:  5'- aAGGCGGCcgaggauGCCGCGcgcggcccgauUG-CGCAGCg -3'
miRNA:   3'- cUUCGCCGaau----UGGCGC-----------ACaGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 18537 0.66 0.708195
Target:  5'- aAAGCGGCUcgcGCCGCGUa--GgAGCc -3'
miRNA:   3'- cUUCGCCGAau-UGGCGCAcagCgUCG- -5'
24142 3' -53.9 NC_005263.2 + 19175 0.66 0.740835
Target:  5'- cGgcGCGGCUcgucGGCCGCGcGUgggaUGUGGCg -3'
miRNA:   3'- -CuuCGCCGAa---UUGGCGCaCA----GCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 19762 0.73 0.352371
Target:  5'- -uGGCGGCgcucgUGGCCGUGUGggcaaucguUCGCAaGCu -3'
miRNA:   3'- cuUCGCCGa----AUUGGCGCAC---------AGCGU-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.