miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24142 3' -53.9 NC_005263.2 + 36929 1.11 0.000836
Target:  5'- gGAAGCGGCUUAACCGCGUGUCGCAGCc -3'
miRNA:   3'- -CUUCGCCGAAUUGGCGCACAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 33988 0.76 0.239276
Target:  5'- -uAGCGGCgaggccGGCCGUGUuggcugcGUCGCGGCg -3'
miRNA:   3'- cuUCGCCGaa----UUGGCGCA-------CAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 955 0.74 0.288208
Target:  5'- cGAGCGGCgacgUAGCgGCG-GUCGCcuGCg -3'
miRNA:   3'- cUUCGCCGa---AUUGgCGCaCAGCGu-CG- -5'
24142 3' -53.9 NC_005263.2 + 19762 0.73 0.352371
Target:  5'- -uGGCGGCgcucgUGGCCGUGUGggcaaucguUCGCAaGCu -3'
miRNA:   3'- cuUCGCCGa----AUUGGCGCAC---------AGCGU-CG- -5'
24142 3' -53.9 NC_005263.2 + 38122 0.72 0.378908
Target:  5'- cAAGaCGGCgaaccgGACgGCGUG-CGCAGCc -3'
miRNA:   3'- cUUC-GCCGaa----UUGgCGCACaGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 20643 0.72 0.378908
Target:  5'- --cGUGGCcgcagUGGCCGCGccgcucGUCGCGGCc -3'
miRNA:   3'- cuuCGCCGa----AUUGGCGCa-----CAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 22795 0.72 0.382547
Target:  5'- uGAGCGGCUUcucGACCGaCGacggaaagaucacgcUGUCGCGcGCg -3'
miRNA:   3'- cUUCGCCGAA---UUGGC-GC---------------ACAGCGU-CG- -5'
24142 3' -53.9 NC_005263.2 + 25019 0.72 0.406754
Target:  5'- -cGGUGGCggUGGCUgcggugGCGUGUaCGCGGCa -3'
miRNA:   3'- cuUCGCCGa-AUUGG------CGCACA-GCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 27798 0.71 0.445811
Target:  5'- --cGCGGUacaucGCCGuCGUGaUCGCGGCg -3'
miRNA:   3'- cuuCGCCGaau--UGGC-GCAC-AGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 24792 0.71 0.445811
Target:  5'- -cGGCGGCUc-GCCGgGcGUCgGCGGCg -3'
miRNA:   3'- cuUCGCCGAauUGGCgCaCAG-CGUCG- -5'
24142 3' -53.9 NC_005263.2 + 16358 0.71 0.455898
Target:  5'- cGAAGCGcGCg--GCCGCGUcGcUCgGCGGCg -3'
miRNA:   3'- -CUUCGC-CGaauUGGCGCA-C-AG-CGUCG- -5'
24142 3' -53.9 NC_005263.2 + 44030 0.71 0.455898
Target:  5'- aGGGUGGCgacuucGCCGCGUuccGUgGCGGCu -3'
miRNA:   3'- cUUCGCCGaau---UGGCGCA---CAgCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 22362 0.71 0.466108
Target:  5'- -cGGCGGCaaGAaaGCGUGUCGauCGGCg -3'
miRNA:   3'- cuUCGCCGaaUUggCGCACAGC--GUCG- -5'
24142 3' -53.9 NC_005263.2 + 15254 0.71 0.466108
Target:  5'- ---cCGGCUacauGCUGCGgcuUGUCGCGGCg -3'
miRNA:   3'- cuucGCCGAau--UGGCGC---ACAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 7346 0.7 0.486874
Target:  5'- aGGAGCGaCUUGccGCCGCcgGUGacgaUCGCGGCg -3'
miRNA:   3'- -CUUCGCcGAAU--UGGCG--CAC----AGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 26200 0.7 0.49742
Target:  5'- --cGCGGCg--GCCGCGcGaUGCGGCg -3'
miRNA:   3'- cuuCGCCGaauUGGCGCaCaGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 32210 0.7 0.508068
Target:  5'- --uGCGGCgaGAUCaGCGUGUaaagcUGCAGCg -3'
miRNA:   3'- cuuCGCCGaaUUGG-CGCACA-----GCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 9124 0.7 0.51881
Target:  5'- uGAAGCGGCgauuGCCGguCGcGUCGUGGUu -3'
miRNA:   3'- -CUUCGCCGaau-UGGC--GCaCAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 17814 0.69 0.529642
Target:  5'- aAGGCGGCcgaggauGCCGCGcgcggcccgauUG-CGCAGCg -3'
miRNA:   3'- cUUCGCCGaau----UGGCGC-----------ACaGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 21103 0.69 0.540555
Target:  5'- uGGGCGGCgacgAGCC-CGg--CGCAGCg -3'
miRNA:   3'- cUUCGCCGaa--UUGGcGCacaGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.