miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24142 3' -53.9 NC_005263.2 + 33988 0.76 0.239276
Target:  5'- -uAGCGGCgaggccGGCCGUGUuggcugcGUCGCGGCg -3'
miRNA:   3'- cuUCGCCGaa----UUGGCGCA-------CAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 20691 0.66 0.71479
Target:  5'- -cGGCGGCgcgaaaccugcGCCGguCGUGaCGCAGCc -3'
miRNA:   3'- cuUCGCCGaau--------UGGC--GCACaGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 21199 0.66 0.730054
Target:  5'- --cGCGGCgcgggcgagUGGgUGCGUuucgagcgcGUCGCAGCc -3'
miRNA:   3'- cuuCGCCGa--------AUUgGCGCA---------CAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 32908 0.66 0.740835
Target:  5'- gGAAGC-GCUU-GCCGaCGUcgCGCGGCg -3'
miRNA:   3'- -CUUCGcCGAAuUGGC-GCAcaGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 32210 0.7 0.508068
Target:  5'- --uGCGGCgaGAUCaGCGUGUaaagcUGCAGCg -3'
miRNA:   3'- cuuCGCCGaaUUGG-CGCACA-----GCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 21103 0.69 0.540555
Target:  5'- uGGGCGGCgacgAGCC-CGg--CGCAGCg -3'
miRNA:   3'- cUUCGCCGaa--UUGGcGCacaGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 28957 0.69 0.573711
Target:  5'- --uGCGGUcgGAUCG-GUGUCGCGGa -3'
miRNA:   3'- cuuCGCCGaaUUGGCgCACAGCGUCg -5'
24142 3' -53.9 NC_005263.2 + 35469 0.68 0.607317
Target:  5'- -cAGCgGGCgccgaAACCGaCGUcGUCGCAGUu -3'
miRNA:   3'- cuUCG-CCGaa---UUGGC-GCA-CAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 44896 0.67 0.661388
Target:  5'- cGAGGuCGGCccgaucUGGCCGCGcucgccgacgCGCAGCg -3'
miRNA:   3'- -CUUC-GCCGa-----AUUGGCGCaca-------GCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 21919 0.66 0.708195
Target:  5'- --cGCGGCc--GCCGCGcgGcCGCAGa -3'
miRNA:   3'- cuuCGCCGaauUGGCGCa-CaGCGUCg -5'
24142 3' -53.9 NC_005263.2 + 2664 0.67 0.674851
Target:  5'- -cGGCGGCgacaccggcAGCCuGCaGUGUCGCgccGGCg -3'
miRNA:   3'- cuUCGCCGaa-------UUGG-CG-CACAGCG---UCG- -5'
24142 3' -53.9 NC_005263.2 + 35869 0.67 0.65239
Target:  5'- --uGCGGCagccccaaauacUUcGCCGCGUugauGUCGguGCg -3'
miRNA:   3'- cuuCGCCG------------AAuUGGCGCA----CAGCguCG- -5'
24142 3' -53.9 NC_005263.2 + 19762 0.73 0.352371
Target:  5'- -uGGCGGCgcucgUGGCCGUGUGggcaaucguUCGCAaGCu -3'
miRNA:   3'- cuUCGCCGa----AUUGGCGCAC---------AGCGU-CG- -5'
24142 3' -53.9 NC_005263.2 + 17012 0.67 0.674851
Target:  5'- cGAAGCGuucguaucGCUcgAGCaGCGcGUCGCGGCc -3'
miRNA:   3'- -CUUCGC--------CGAa-UUGgCGCaCAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 20643 0.72 0.378908
Target:  5'- --cGUGGCcgcagUGGCCGCGccgcucGUCGCGGCc -3'
miRNA:   3'- cuuCGCCGa----AUUGGCGCa-----CAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 30243 0.67 0.65239
Target:  5'- --cGCGGCgaagcGugCGCGguaGUCGuCGGCg -3'
miRNA:   3'- cuuCGCCGaa---UugGCGCa--CAGC-GUCG- -5'
24142 3' -53.9 NC_005263.2 + 31496 0.67 0.697143
Target:  5'- -cAGCGGCgcgAGCUGC-UGcUCGCGcGCg -3'
miRNA:   3'- cuUCGCCGaa-UUGGCGcAC-AGCGU-CG- -5'
24142 3' -53.9 NC_005263.2 + 24115 0.66 0.730054
Target:  5'- --cGCGGCgccuuucgggUAGCCGCcgauuugcGUCGCGGUu -3'
miRNA:   3'- cuuCGCCGa---------AUUGGCGca------CAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 27798 0.71 0.445811
Target:  5'- --cGCGGUacaucGCCGuCGUGaUCGCGGCg -3'
miRNA:   3'- cuuCGCCGaau--UGGC-GCAC-AGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 2841 0.69 0.540555
Target:  5'- uGAAuGCGGCUUcGAUCaGCG--UCGCAGCg -3'
miRNA:   3'- -CUU-CGCCGAA-UUGG-CGCacAGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.