miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24145 3' -58.9 NC_005263.2 + 31928 0.66 0.494956
Target:  5'- gUCGACGauuuUGCgUUCGCGGCGUCUg -3'
miRNA:   3'- -AGCUGUacu-GCGgGAGCGUCGCGGAg -5'
24145 3' -58.9 NC_005263.2 + 42652 0.66 0.494956
Target:  5'- cCGACGUGGCaaCCgaUCGCuacuGCGCCg- -3'
miRNA:   3'- aGCUGUACUGcgGG--AGCGu---CGCGGag -5'
24145 3' -58.9 NC_005263.2 + 30298 0.66 0.494956
Target:  5'- gCGGCAUccucGGC-CgCCUUGCcauGCGCCUCg -3'
miRNA:   3'- aGCUGUA----CUGcG-GGAGCGu--CGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 34783 0.66 0.484784
Target:  5'- aUCaGCAUGACGCagCUCGCGaUGCCg- -3'
miRNA:   3'- -AGcUGUACUGCGg-GAGCGUcGCGGag -5'
24145 3' -58.9 NC_005263.2 + 11895 0.66 0.484784
Target:  5'- gCGGCGccgGGCGCCUgcgCGCuGGCGuCCUg -3'
miRNA:   3'- aGCUGUa--CUGCGGGa--GCG-UCGC-GGAg -5'
24145 3' -58.9 NC_005263.2 + 25791 0.66 0.484784
Target:  5'- cUCGACGUcGACGCCCgcgaCGC--UGCCa- -3'
miRNA:   3'- -AGCUGUA-CUGCGGGa---GCGucGCGGag -5'
24145 3' -58.9 NC_005263.2 + 3700 0.66 0.484784
Target:  5'- uUCGACGUcGACGCCaaugcCGC-GCGCgUUg -3'
miRNA:   3'- -AGCUGUA-CUGCGGga---GCGuCGCGgAG- -5'
24145 3' -58.9 NC_005263.2 + 13721 0.66 0.474715
Target:  5'- gUCGcCGUccGACGUgCUCGCGGCGUUa- -3'
miRNA:   3'- -AGCuGUA--CUGCGgGAGCGUCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 31614 0.66 0.46475
Target:  5'- cCGGuCGcGACGgCCgcgcggCGCAGCGCCg- -3'
miRNA:   3'- aGCU-GUaCUGCgGGa-----GCGUCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 9550 0.66 0.445156
Target:  5'- cCGACGcGGCGCucgcggcuugCCagGCGGCGCgCUCg -3'
miRNA:   3'- aGCUGUaCUGCG----------GGagCGUCGCG-GAG- -5'
24145 3' -58.9 NC_005263.2 + 32194 0.66 0.445156
Target:  5'- aUCGAgGUaGAUGCCCU-GCGGCGagaUCa -3'
miRNA:   3'- -AGCUgUA-CUGCGGGAgCGUCGCgg-AG- -5'
24145 3' -58.9 NC_005263.2 + 8941 0.66 0.444188
Target:  5'- aUCGGCAUaccGAUGCCgUCGCgcaugucAGCGUCg- -3'
miRNA:   3'- -AGCUGUA---CUGCGGgAGCG-------UCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 589 0.67 0.435533
Target:  5'- aUCGGCaAUGGCGCCaUCaguaacguagGCAGUGCC-Cg -3'
miRNA:   3'- -AGCUG-UACUGCGGgAG----------CGUCGCGGaG- -5'
24145 3' -58.9 NC_005263.2 + 3943 0.67 0.43267
Target:  5'- cCGGCAgguUGGCGCCgUUcugcagauagccgaGCAGCGUCUg -3'
miRNA:   3'- aGCUGU---ACUGCGGgAG--------------CGUCGCGGAg -5'
24145 3' -58.9 NC_005263.2 + 17053 0.67 0.429818
Target:  5'- gCGGCGUGAacggcuucaugaaggUGCUCgagcagCGCAcgccGCGCCUCg -3'
miRNA:   3'- aGCUGUACU---------------GCGGGa-----GCGU----CGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 24283 0.67 0.426032
Target:  5'- aCGACc-GGCGCUUUCGCGGCGacgaUCa -3'
miRNA:   3'- aGCUGuaCUGCGGGAGCGUCGCgg--AG- -5'
24145 3' -58.9 NC_005263.2 + 43207 0.67 0.416655
Target:  5'- gCGACGgcGCGCUaUCGCAGCGCg-- -3'
miRNA:   3'- aGCUGUacUGCGGgAGCGUCGCGgag -5'
24145 3' -58.9 NC_005263.2 + 32828 0.67 0.407406
Target:  5'- cUCGuACucGGCGCCCUU-CAGCGCCg- -3'
miRNA:   3'- -AGC-UGuaCUGCGGGAGcGUCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 2966 0.67 0.407406
Target:  5'- gCGAgCGUGAUGCCCgucaGCGGaauGCCUa -3'
miRNA:   3'- aGCU-GUACUGCGGGag--CGUCg--CGGAg -5'
24145 3' -58.9 NC_005263.2 + 28821 0.67 0.407406
Target:  5'- gUGAcCGUGACGCgCaCGCGGCGCUc- -3'
miRNA:   3'- aGCU-GUACUGCGgGaGCGUCGCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.