miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24146 5' -53.2 NC_005263.2 + 961 0.7 0.532891
Target:  5'- -gCGACGuAGcgGcGGuCGCCUGCGCGu -3'
miRNA:   3'- aaGCUGC-UUuaCuUC-GCGGACGCGCu -5'
24146 5' -53.2 NC_005263.2 + 1053 0.66 0.756971
Target:  5'- cUUCGACGAAuc--AGCGCUUGUaauccuuaGCGAc -3'
miRNA:   3'- -AAGCUGCUUuacuUCGCGGACG--------CGCU- -5'
24146 5' -53.2 NC_005263.2 + 1060 0.68 0.650277
Target:  5'- -gCGGCGcuugcgaggaggcuuGAcgGAAGUGCCgaauUGCGCGAc -3'
miRNA:   3'- aaGCUGC---------------UUuaCUUCGCGG----ACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 3706 0.66 0.746252
Target:  5'- gUUCGaAUGGuuUGAuugAGCGCCUcGCGCa- -3'
miRNA:   3'- -AAGC-UGCUuuACU---UCGCGGA-CGCGcu -5'
24146 5' -53.2 NC_005263.2 + 7274 0.68 0.642304
Target:  5'- aUCGACGggGcgagcgacaUGAcGCGUgccugcggccagguCUGCGCGAu -3'
miRNA:   3'- aAGCUGCuuU---------ACUuCGCG--------------GACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 9452 0.71 0.48955
Target:  5'- cUUGGCGAGGUu-GGCGUCgaUGCGCGAc -3'
miRNA:   3'- aAGCUGCUUUAcuUCGCGG--ACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 9783 0.69 0.577527
Target:  5'- aUCGcacCGAAcgGggGCGCCUcgccgcGUGCGGc -3'
miRNA:   3'- aAGCu--GCUUuaCuuCGCGGA------CGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 10285 0.75 0.266497
Target:  5'- gUCGGCGAcAUG-AGCGCCggaUGCGCGc -3'
miRNA:   3'- aAGCUGCUuUACuUCGCGG---ACGCGCu -5'
24146 5' -53.2 NC_005263.2 + 11890 0.72 0.427864
Target:  5'- -aCGACGcggcgccGGGCGCCUGCGCGc -3'
miRNA:   3'- aaGCUGCuuuac--UUCGCGGACGCGCu -5'
24146 5' -53.2 NC_005263.2 + 13205 0.77 0.21485
Target:  5'- gUCGACauucgcgccaGgcGUG-AGCGCCUGCGCGAg -3'
miRNA:   3'- aAGCUG----------CuuUACuUCGCGGACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 15184 0.69 0.566274
Target:  5'- aUCGACGc---GAGcGCGCC-GCGCGAc -3'
miRNA:   3'- aAGCUGCuuuaCUU-CGCGGaCGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 15469 0.66 0.767552
Target:  5'- -gCGACGAuuUGccGUGCUgcggcgGCGCGGu -3'
miRNA:   3'- aaGCUGCUuuACuuCGCGGa-----CGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 16347 0.72 0.398792
Target:  5'- cUUCGACGAGAcGAAGCGCgCgGcCGCGu -3'
miRNA:   3'- -AAGCUGCUUUaCUUCGCG-GaC-GCGCu -5'
24146 5' -53.2 NC_005263.2 + 17364 0.71 0.478969
Target:  5'- gUCGACGAuccgaaccgcGUGAAGCugucuGCCgGCGCGGc -3'
miRNA:   3'- aAGCUGCUu---------UACUUCG-----CGGaCGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 18436 0.68 0.616093
Target:  5'- -gCGAUGAAccgcucgaggugcgcGUGAAGCaGCC-GCGCGGc -3'
miRNA:   3'- aaGCUGCUU---------------UACUUCG-CGGaCGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 20178 0.66 0.746252
Target:  5'- aUCGACGAc--GAGcGCGCC-GgGCGAc -3'
miRNA:   3'- aAGCUGCUuuaCUU-CGCGGaCgCGCU- -5'
24146 5' -53.2 NC_005263.2 + 20978 0.69 0.584303
Target:  5'- -cCGACGcggcugcGCGCCUGCGCGu -3'
miRNA:   3'- aaGCUGCuuuacuuCGCGGACGCGCu -5'
24146 5' -53.2 NC_005263.2 + 21376 0.7 0.521916
Target:  5'- cUCGACGuGAUGguGCGCUUcGCGCu- -3'
miRNA:   3'- aAGCUGCuUUACuuCGCGGA-CGCGcu -5'
24146 5' -53.2 NC_005263.2 + 22104 0.69 0.588829
Target:  5'- aUUCGGCGA-----AGUGCC-GCGCGAg -3'
miRNA:   3'- -AAGCUGCUuuacuUCGCGGaCGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 22904 0.68 0.611539
Target:  5'- gUUCGugcCGGAcgGAGGUGCCcaagcUGCGCGc -3'
miRNA:   3'- -AAGCu--GCUUuaCUUCGCGG-----ACGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.