Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24146 | 5' | -53.2 | NC_005263.2 | + | 38614 | 0.72 | 0.418034 |
Target: 5'- -gCGcACGcGAUGGauAGCGCCgGCGCGAa -3' miRNA: 3'- aaGC-UGCuUUACU--UCGCGGaCGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 18436 | 0.68 | 0.616093 |
Target: 5'- -gCGAUGAAccgcucgaggugcgcGUGAAGCaGCC-GCGCGGc -3' miRNA: 3'- aaGCUGCUU---------------UACUUCG-CGGaCGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 15184 | 0.69 | 0.566274 |
Target: 5'- aUCGACGc---GAGcGCGCC-GCGCGAc -3' miRNA: 3'- aAGCUGCuuuaCUU-CGCGGaCGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 35731 | 0.69 | 0.566274 |
Target: 5'- -aCGGCGAGAcgccggaaGAAGCGgCgcgGCGCGAg -3' miRNA: 3'- aaGCUGCUUUa-------CUUCGCgGa--CGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 37618 | 0.7 | 0.543947 |
Target: 5'- cUUCGACGGc---AAGCaCCUGCGCGGc -3' miRNA: 3'- -AAGCUGCUuuacUUCGcGGACGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 33813 | 0.7 | 0.537304 |
Target: 5'- gUCGACGgcAUGAcgaucgcgcugcaucAGCuuuGCCUGCGCa- -3' miRNA: 3'- aAGCUGCuuUACU---------------UCG---CGGACGCGcu -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 961 | 0.7 | 0.532891 |
Target: 5'- -gCGACGuAGcgGcGGuCGCCUGCGCGu -3' miRNA: 3'- aaGCUGC-UUuaCuUC-GCGGACGCGCu -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 36501 | 0.7 | 0.506702 |
Target: 5'- --aGGCGAAGUGcuGCGCCacuucaucgcgggGCGCGAc -3' miRNA: 3'- aagCUGCUUUACuuCGCGGa------------CGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 17364 | 0.71 | 0.478969 |
Target: 5'- gUCGACGAuccgaaccgcGUGAAGCugucuGCCgGCGCGGc -3' miRNA: 3'- aAGCUGCUu---------UACUUCG-----CGGaCGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 39685 | 0.68 | 0.634326 |
Target: 5'- -aCGugGAcgcGAUGggGCGa--GCGCGAg -3' miRNA: 3'- aaGCugCU---UUACuuCGCggaCGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 33086 | 0.68 | 0.634326 |
Target: 5'- gUCGGCG-AAUGAucUGCUUGCGCGc -3' miRNA: 3'- aAGCUGCuUUACUucGCGGACGCGCu -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 7274 | 0.68 | 0.642304 |
Target: 5'- aUCGACGggGcgagcgacaUGAcGCGUgccugcggccagguCUGCGCGAu -3' miRNA: 3'- aAGCUGCuuU---------ACUuCGCG--------------GACGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 41526 | 0.66 | 0.765448 |
Target: 5'- gUCGACuacuu---GCGCCUGCGCa- -3' miRNA: 3'- aAGCUGcuuuacuuCGCGGACGCGcu -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 42639 | 0.66 | 0.73541 |
Target: 5'- -aCGcCGAAGcGAAGUGgCUGCGCa- -3' miRNA: 3'- aaGCuGCUUUaCUUCGCgGACGCGcu -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 42322 | 0.66 | 0.73541 |
Target: 5'- -aCGGCGca--GcGGCGCgUGCGCGAc -3' miRNA: 3'- aaGCUGCuuuaCuUCGCGgACGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 30657 | 0.67 | 0.691055 |
Target: 5'- gUCGaacGCGAucUGAAGUGCauccugcaUGCGCGGg -3' miRNA: 3'- aAGC---UGCUuuACUUCGCGg-------ACGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 1060 | 0.68 | 0.650277 |
Target: 5'- -gCGGCGcuugcgaggaggcuuGAcgGAAGUGCCgaauUGCGCGAc -3' miRNA: 3'- aaGCUGC---------------UUuaCUUCGCGG----ACGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 42774 | 0.68 | 0.645722 |
Target: 5'- -aCGGCGgcGUGAcgauccAGCGCgaagGCGCGAa -3' miRNA: 3'- aaGCUGCuuUACU------UCGCGga--CGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 37359 | 0.68 | 0.645722 |
Target: 5'- -cCGACGGccgcauGCGCgUGCGCGAc -3' miRNA: 3'- aaGCUGCUuuacuuCGCGgACGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 42905 | 0.68 | 0.645722 |
Target: 5'- -gCGACGGuagGAcgccGCGCCUGCagGCGAu -3' miRNA: 3'- aaGCUGCUuuaCUu---CGCGGACG--CGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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