miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24147 3' -53.9 NC_005263.2 + 23893 0.66 0.765485
Target:  5'- -gCGUGagcGCGCUCG--UGAGCGCGc -3'
miRNA:   3'- caGCAUgaaCGCGAGCuaGCUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 13048 0.66 0.755006
Target:  5'- aUCGU-CUcugaUGUGCUCGGUuucaCGGGCGUg -3'
miRNA:   3'- cAGCAuGA----ACGCGAGCUA----GCUCGCGu -5'
24147 3' -53.9 NC_005263.2 + 11390 0.66 0.755006
Target:  5'- cUCGcgGCcUGCGCgcaCGugguUCGGGCGCGg -3'
miRNA:   3'- cAGCa-UGaACGCGa--GCu---AGCUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 47802 0.66 0.755006
Target:  5'- -cCGUAUUagGCGCUUGGggcuucauuaUCGGGUGCGc -3'
miRNA:   3'- caGCAUGAa-CGCGAGCU----------AGCUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 31264 0.66 0.743329
Target:  5'- -aCGU-CUcGCGCaUCGAcugguugaacgcgUCGAGCGCGu -3'
miRNA:   3'- caGCAuGAaCGCG-AGCU-------------AGCUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 3173 0.66 0.733668
Target:  5'- uUCGUggcgcggaauaACUgccgcUGCGCgUCGG-CGAGCGCGg -3'
miRNA:   3'- cAGCA-----------UGA-----ACGCG-AGCUaGCUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 18279 0.66 0.722833
Target:  5'- -cCGgGCgaUGCGCUCG-UCGuGCGCGc -3'
miRNA:   3'- caGCaUGa-ACGCGAGCuAGCuCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 46601 0.66 0.722833
Target:  5'- aUCG-ACgccgUGCGCUCGAaagaaacCGAGUGCc -3'
miRNA:   3'- cAGCaUGa---ACGCGAGCUa------GCUCGCGu -5'
24147 3' -53.9 NC_005263.2 + 872 0.66 0.722833
Target:  5'- cGUCGUGCcggccgGCGCuUCGuUC-AGCGCGg -3'
miRNA:   3'- -CAGCAUGaa----CGCG-AGCuAGcUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 2240 0.67 0.705305
Target:  5'- -gCGUAC--GCGC-CGAuguacguguaguuguUCGAGCGCAg -3'
miRNA:   3'- caGCAUGaaCGCGaGCU---------------AGCUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 32686 0.67 0.699786
Target:  5'- uGUCG-ACgUGCGUcagcaggUCGGUCacGAGCGCAu -3'
miRNA:   3'- -CAGCaUGaACGCG-------AGCUAG--CUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 42894 0.67 0.68981
Target:  5'- -gCGUGCcgcGCGCUCGccuggacgCGAGUGCGc -3'
miRNA:   3'- caGCAUGaa-CGCGAGCua------GCUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 30368 0.67 0.688698
Target:  5'- cGUCGUGCa-GCGCUucggggaugugcgCGAUCGcuucggauAGCGCGa -3'
miRNA:   3'- -CAGCAUGaaCGCGA-------------GCUAGC--------UCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 4265 0.67 0.656264
Target:  5'- -aCGUugUUGCGCcCGGUCGAcacgaacaucGUGCc -3'
miRNA:   3'- caGCAugAACGCGaGCUAGCU----------CGCGu -5'
24147 3' -53.9 NC_005263.2 + 15366 0.67 0.656264
Target:  5'- cGUCGUAC-UGCGCaCGcuGUCGGGUaGCGa -3'
miRNA:   3'- -CAGCAUGaACGCGaGC--UAGCUCG-CGU- -5'
24147 3' -53.9 NC_005263.2 + 37365 0.68 0.632637
Target:  5'- -cCGUGCUcgaUGCGCUCGAgucugcgUCGcccuggcuGCGCGa -3'
miRNA:   3'- caGCAUGA---ACGCGAGCU-------AGCu-------CGCGU- -5'
24147 3' -53.9 NC_005263.2 + 9723 0.68 0.62926
Target:  5'- -gCGcGCUUGCGCUCGuucgccacagcaguGUCGAucgcgguGCGCAc -3'
miRNA:   3'- caGCaUGAACGCGAGC--------------UAGCU-------CGCGU- -5'
24147 3' -53.9 NC_005263.2 + 17889 0.68 0.600026
Target:  5'- aGUUGUGCUUaccgugaacgGCGCgcaGAUCG-GCGCGc -3'
miRNA:   3'- -CAGCAUGAA----------CGCGag-CUAGCuCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 41662 0.69 0.577661
Target:  5'- cUCGUGCUcugGCGgcagaUCG-UCGGGCGCGg -3'
miRNA:   3'- cAGCAUGAa--CGCg----AGCuAGCUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 5846 0.69 0.577661
Target:  5'- uGUCGgcCgucgUGCGgUCGAagUCGAGcCGCAg -3'
miRNA:   3'- -CAGCauGa---ACGCgAGCU--AGCUC-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.