miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24149 3' -57.4 NC_005263.2 + 33991 0.66 0.560533
Target:  5'- cGGcGAGGCCGGCCGUGuuGGCu---- -3'
miRNA:   3'- cUC-CUUUGGCCGGUGCggCCGcuaau -5'
24149 3' -57.4 NC_005263.2 + 22493 0.66 0.560533
Target:  5'- -----cGCCGGCgGCgGCCGGCGGc-- -3'
miRNA:   3'- cuccuuUGGCCGgUG-CGGCCGCUaau -5'
24149 3' -57.4 NC_005263.2 + 45810 0.66 0.557277
Target:  5'- cGGGcguGCCGGCCACgGCgcacgaccugccgaCGGCGAa-- -3'
miRNA:   3'- cUCCuu-UGGCCGGUG-CG--------------GCCGCUaau -5'
24149 3' -57.4 NC_005263.2 + 21800 0.66 0.5497
Target:  5'- ----cGACCGGCcugcagCugGCCGGCGAg-- -3'
miRNA:   3'- cuccuUUGGCCG------GugCGGCCGCUaau -5'
24149 3' -57.4 NC_005263.2 + 40879 0.66 0.538934
Target:  5'- cGAaGAGGCgCGcGCCuucugguCGCCGGCGAUg- -3'
miRNA:   3'- -CUcCUUUG-GC-CGGu------GCGGCCGCUAau -5'
24149 3' -57.4 NC_005263.2 + 9017 0.66 0.538934
Target:  5'- cAGGAuuuUCGuGCCGCGCgaCGGCGAg-- -3'
miRNA:   3'- cUCCUuu-GGC-CGGUGCG--GCCGCUaau -5'
24149 3' -57.4 NC_005263.2 + 42018 0.66 0.538934
Target:  5'- cAGuGcgGCCGGCCGCGCCaaGGCu---- -3'
miRNA:   3'- cUC-CuuUGGCCGGUGCGG--CCGcuaau -5'
24149 3' -57.4 NC_005263.2 + 26181 0.66 0.538934
Target:  5'- uGAGGAcggucugcGGCCGcGCgGCgGCCGcGCGAUg- -3'
miRNA:   3'- -CUCCU--------UUGGC-CGgUG-CGGC-CGCUAau -5'
24149 3' -57.4 NC_005263.2 + 37950 0.66 0.52824
Target:  5'- -cGGugcgcAACCGGCCgaugccGCGCCGGCu---- -3'
miRNA:   3'- cuCCu----UUGGCCGG------UGCGGCCGcuaau -5'
24149 3' -57.4 NC_005263.2 + 44234 0.66 0.52824
Target:  5'- aAGGAGAUugCGGCCaacccggacuggACGCCGGCuGAc-- -3'
miRNA:   3'- cUCCUUUG--GCCGG------------UGCGGCCG-CUaau -5'
24149 3' -57.4 NC_005263.2 + 27133 0.66 0.52824
Target:  5'- cAGGc-GCgCaGCCGCGUCGGCGAUg- -3'
miRNA:   3'- cUCCuuUG-GcCGGUGCGGCCGCUAau -5'
24149 3' -57.4 NC_005263.2 + 14098 0.66 0.52824
Target:  5'- -uGGu-ACCGGCUGCGC-GGCGGUc- -3'
miRNA:   3'- cuCCuuUGGCCGGUGCGgCCGCUAau -5'
24149 3' -57.4 NC_005263.2 + 27283 0.66 0.52824
Target:  5'- -uGGAugucgauACCuGCCGCGCCGGCc---- -3'
miRNA:   3'- cuCCUu------UGGcCGGUGCGGCCGcuaau -5'
24149 3' -57.4 NC_005263.2 + 6833 0.66 0.527175
Target:  5'- cGGGAAGCgcagcgaCGGCgaCACGaCCGGCGAc-- -3'
miRNA:   3'- cUCCUUUG-------GCCG--GUGC-GGCCGCUaau -5'
24149 3' -57.4 NC_005263.2 + 4604 0.66 0.517626
Target:  5'- -------aCGGCCGCGCCGGCa---- -3'
miRNA:   3'- cuccuuugGCCGGUGCGGCCGcuaau -5'
24149 3' -57.4 NC_005263.2 + 36848 0.66 0.517626
Target:  5'- -cGGGAAUgGGUcgCACGCCcGGCGGUc- -3'
miRNA:   3'- cuCCUUUGgCCG--GUGCGG-CCGCUAau -5'
24149 3' -57.4 NC_005263.2 + 8037 0.66 0.517626
Target:  5'- cGAGGcguCCGcGCCgugGCGCCGcGCGAg-- -3'
miRNA:   3'- -CUCCuuuGGC-CGG---UGCGGC-CGCUaau -5'
24149 3' -57.4 NC_005263.2 + 9682 0.66 0.517626
Target:  5'- ----uGGCCGGCguCACGCCGGCGc--- -3'
miRNA:   3'- cuccuUUGGCCG--GUGCGGCCGCuaau -5'
24149 3' -57.4 NC_005263.2 + 41806 0.67 0.496662
Target:  5'- ---cAAACCGGgCGCGCCGGUG-UUGc -3'
miRNA:   3'- cuccUUUGGCCgGUGCGGCCGCuAAU- -5'
24149 3' -57.4 NC_005263.2 + 8387 0.67 0.486323
Target:  5'- cAGGucGACgCGGcCCGCGCCGGCcAUUu -3'
miRNA:   3'- cUCCu-UUG-GCC-GGUGCGGCCGcUAAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.