miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24154 3' -60.2 NC_005263.2 + 54 0.67 0.377618
Target:  5'- aUgGGcCCGCUUgcgGcGCACGUCAGGCa -3'
miRNA:   3'- cGgCC-GGCGAGaa-C-CGUGCGGUUCGc -5'
24154 3' -60.2 NC_005263.2 + 205 0.69 0.250229
Target:  5'- cCCGGCCGCUUggUUGGCACcGUagauauGCGu -3'
miRNA:   3'- cGGCCGGCGAG--AACCGUG-CGguu---CGC- -5'
24154 3' -60.2 NC_005263.2 + 877 0.68 0.328114
Target:  5'- uGCCGGCCgGCgCUUcguucagcgcGGCGguCGCCGccGGCGg -3'
miRNA:   3'- -CGGCCGG-CGaGAA----------CCGU--GCGGU--UCGC- -5'
24154 3' -60.2 NC_005263.2 + 1257 0.71 0.183338
Target:  5'- -aCGGCaugacguGCUcCUUGGCGCGCCGccuGGCGc -3'
miRNA:   3'- cgGCCGg------CGA-GAACCGUGCGGU---UCGC- -5'
24154 3' -60.2 NC_005263.2 + 1423 0.7 0.237824
Target:  5'- gGCgCGcGCCGC-CUUGGCugcGCGCgAGGCu -3'
miRNA:   3'- -CG-GC-CGGCGaGAACCG---UGCGgUUCGc -5'
24154 3' -60.2 NC_005263.2 + 1856 0.7 0.231816
Target:  5'- gGCCGGCgacgugcgGUUC-UGGCGCGCCuGGCc -3'
miRNA:   3'- -CGGCCGg-------CGAGaACCGUGCGGuUCGc -5'
24154 3' -60.2 NC_005263.2 + 2400 0.73 0.152049
Target:  5'- cGCCGGCgGUcgCUUGGU-CGCCGuacAGCGg -3'
miRNA:   3'- -CGGCCGgCGa-GAACCGuGCGGU---UCGC- -5'
24154 3' -60.2 NC_005263.2 + 2696 0.71 0.203674
Target:  5'- cGCgCGGCCGCUCggcagGuGCAUGCgCAGcGCGc -3'
miRNA:   3'- -CG-GCCGGCGAGaa---C-CGUGCG-GUU-CGC- -5'
24154 3' -60.2 NC_005263.2 + 3312 0.67 0.335225
Target:  5'- gGCgCGGCCGCgcgguguucaacgUCU--GCGCGCCGccGGCGc -3'
miRNA:   3'- -CG-GCCGGCG-------------AGAacCGUGCGGU--UCGC- -5'
24154 3' -60.2 NC_005263.2 + 3434 0.66 0.386342
Target:  5'- -aUGGCCGCcgacuUCUUcGGCGCGCgCGAcGCa -3'
miRNA:   3'- cgGCCGGCG-----AGAA-CCGUGCG-GUU-CGc -5'
24154 3' -60.2 NC_005263.2 + 3686 0.67 0.36988
Target:  5'- uGCCGGCCGUcgcgUCauacguucgaaugguUUGauugagcgccucgcGCACGCCGGGCc -3'
miRNA:   3'- -CGGCCGGCG----AG---------------AAC--------------CGUGCGGUUCGc -5'
24154 3' -60.2 NC_005263.2 + 3971 0.67 0.369026
Target:  5'- gGCaGGCCGUUgUaacgGGCGCcgccGCCGAGCa -3'
miRNA:   3'- -CGgCCGGCGAgAa---CCGUG----CGGUUCGc -5'
24154 3' -60.2 NC_005263.2 + 5044 0.66 0.385464
Target:  5'- cGgCGGCCGaCUaUUGGCcgacgucggcgucGCGCCAaacAGCGu -3'
miRNA:   3'- -CgGCCGGC-GAgAACCG-------------UGCGGU---UCGC- -5'
24154 3' -60.2 NC_005263.2 + 6099 0.78 0.058851
Target:  5'- gGCCGGCCGCaCUgccGGCACGUCAugugcucGGCGu -3'
miRNA:   3'- -CGGCCGGCGaGAa--CCGUGCGGU-------UCGC- -5'
24154 3' -60.2 NC_005263.2 + 6555 0.66 0.4133
Target:  5'- cGCaucGCCGC-CacGGCGCGCCGcGCGu -3'
miRNA:   3'- -CGgc-CGGCGaGaaCCGUGCGGUuCGC- -5'
24154 3' -60.2 NC_005263.2 + 6617 0.68 0.290655
Target:  5'- cGgCGGCgCGCUC--GGCGCGgUCGAGCa -3'
miRNA:   3'- -CgGCCG-GCGAGaaCCGUGC-GGUUCGc -5'
24154 3' -60.2 NC_005263.2 + 6627 0.66 0.431903
Target:  5'- -aCGGCCGaCUCgcc-CGCGUCGAGCa -3'
miRNA:   3'- cgGCCGGC-GAGaaccGUGCGGUUCGc -5'
24154 3' -60.2 NC_005263.2 + 7849 0.76 0.085223
Target:  5'- gGCCGGCCGCgUCgc-GCACuucguacagcguGCCAAGCGg -3'
miRNA:   3'- -CGGCCGGCG-AGaacCGUG------------CGGUUCGC- -5'
24154 3' -60.2 NC_005263.2 + 8824 0.76 0.080568
Target:  5'- uGCCGGCCGCUCggcGUGCGaUCAAGCa -3'
miRNA:   3'- -CGGCCGGCGAGaacCGUGC-GGUUCGc -5'
24154 3' -60.2 NC_005263.2 + 9136 0.66 0.42254
Target:  5'- uGCCGGUCGCgucgugguucgUCUcaugcuuguUGGCcgugccgaucaGCGCgAAGCGa -3'
miRNA:   3'- -CGGCCGGCG-----------AGA---------ACCG-----------UGCGgUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.