miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24154 3' -60.2 NC_005263.2 + 46516 0.8 0.040693
Target:  5'- cGCCGcGCUGCUC--GGCACGuCCAAGCGu -3'
miRNA:   3'- -CGGC-CGGCGAGaaCCGUGC-GGUUCGC- -5'
24154 3' -60.2 NC_005263.2 + 20776 0.71 0.188247
Target:  5'- gGCCGcGCCGCugaUCgucGGCGCGUCGGGUc -3'
miRNA:   3'- -CGGC-CGGCG---AGaa-CCGUGCGGUUCGc -5'
24154 3' -60.2 NC_005263.2 + 37710 0.7 0.214002
Target:  5'- cGCCGGacCCGCUCgccGGCcggcccgGCGCguGGCGg -3'
miRNA:   3'- -CGGCC--GGCGAGaa-CCG-------UGCGguUCGC- -5'
24154 3' -60.2 NC_005263.2 + 26308 0.66 0.431903
Target:  5'- cGCCGGCCaGCU----GCAgGCCGgucGGCGu -3'
miRNA:   3'- -CGGCCGG-CGAgaacCGUgCGGU---UCGC- -5'
24154 3' -60.2 NC_005263.2 + 31723 0.76 0.090134
Target:  5'- uGCCGGCCaGCUUcaucaGGCcgcCGCCGAGCGa -3'
miRNA:   3'- -CGGCCGG-CGAGaa---CCGu--GCGGUUCGC- -5'
24154 3' -60.2 NC_005263.2 + 37927 0.73 0.131669
Target:  5'- uUCGGCCugcucgcgauucgcGCUCUcGGCgACGCCAAGCu -3'
miRNA:   3'- cGGCCGG--------------CGAGAaCCG-UGCGGUUCGc -5'
24154 3' -60.2 NC_005263.2 + 42024 0.73 0.144042
Target:  5'- gGCCGGCCGCgccaaggCUUccugucGGCGCGCgugAAGCGc -3'
miRNA:   3'- -CGGCCGGCGa------GAA------CCGUGCGg--UUCGC- -5'
24154 3' -60.2 NC_005263.2 + 45730 0.73 0.144042
Target:  5'- gGCCuGCCGCUCggugcugagggUUGGCACGgCCugcgcuGGCGg -3'
miRNA:   3'- -CGGcCGGCGAG-----------AACCGUGC-GGu-----UCGC- -5'
24154 3' -60.2 NC_005263.2 + 12587 0.72 0.164818
Target:  5'- cGCCGGgCGCagUcGGCGCGCCA-GUGu -3'
miRNA:   3'- -CGGCCgGCGagAaCCGUGCGGUuCGC- -5'
24154 3' -60.2 NC_005263.2 + 1257 0.71 0.183338
Target:  5'- -aCGGCaugacguGCUcCUUGGCGCGCCGccuGGCGc -3'
miRNA:   3'- cgGCCGg------CGA-GAACCGUGCGGU---UCGC- -5'
24154 3' -60.2 NC_005263.2 + 19116 0.72 0.173858
Target:  5'- gGUCGGCCGCgcCgaGcGCAuCGCCGGGCGc -3'
miRNA:   3'- -CGGCCGGCGa-GaaC-CGU-GCGGUUCGC- -5'
24154 3' -60.2 NC_005263.2 + 14147 0.72 0.160458
Target:  5'- aGCgCGGCCGC-CUUGGCGacuucggGCC-GGCGg -3'
miRNA:   3'- -CG-GCCGGCGaGAACCGUg------CGGuUCGC- -5'
24154 3' -60.2 NC_005263.2 + 29153 0.79 0.052659
Target:  5'- uGCCGGCugCGCUCguaaccGGCGCGCuCGAGCGc -3'
miRNA:   3'- -CGGCCG--GCGAGaa----CCGUGCG-GUUCGC- -5'
24154 3' -60.2 NC_005263.2 + 10177 0.72 0.178542
Target:  5'- aCCGGCUGC-CggcGGCGCGCCu-GCGc -3'
miRNA:   3'- cGGCCGGCGaGaa-CCGUGCGGuuCGC- -5'
24154 3' -60.2 NC_005263.2 + 39263 0.78 0.062471
Target:  5'- gGCCGaGCUGCgcgcgaugCUUGaucGCACGCCGAGCGg -3'
miRNA:   3'- -CGGC-CGGCGa-------GAAC---CGUGCGGUUCGC- -5'
24154 3' -60.2 NC_005263.2 + 2400 0.73 0.152049
Target:  5'- cGCCGGCgGUcgCUUGGU-CGCCGuacAGCGg -3'
miRNA:   3'- -CGGCCGgCGa-GAACCGuGCGGU---UCGC- -5'
24154 3' -60.2 NC_005263.2 + 20655 0.71 0.183338
Target:  5'- gGCCGcGCCGCUCgucgcGGC-CGUCGaaAGCGu -3'
miRNA:   3'- -CGGC-CGGCGAGaa---CCGuGCGGU--UCGC- -5'
24154 3' -60.2 NC_005263.2 + 47422 0.71 0.209054
Target:  5'- aUCGGCgCGCUCggcaaGGCGCGCUAcgaugaGGCGu -3'
miRNA:   3'- cGGCCG-GCGAGaa---CCGUGCGGU------UCGC- -5'
24154 3' -60.2 NC_005263.2 + 30683 0.76 0.080342
Target:  5'- aGCUGGCCGCUgUUGcaccugcgacaccGCcCGCCAGGCGc -3'
miRNA:   3'- -CGGCCGGCGAgAAC-------------CGuGCGGUUCGC- -5'
24154 3' -60.2 NC_005263.2 + 33997 0.73 0.140184
Target:  5'- gGCCGGCCGUg-UUGGCuGCGUCGcGGCGc -3'
miRNA:   3'- -CGGCCGGCGagAACCG-UGCGGU-UCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.