miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24155 5' -55.1 NC_005263.2 + 32077 1.12 0.000599
Target:  5'- cGCUCACAACGUGCGUCACGUGCGGCGg -3'
miRNA:   3'- -CGAGUGUUGCACGCAGUGCACGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 38424 0.86 0.045491
Target:  5'- gGCaaagCGCGACGUGCGUUACGUGCucGGCGg -3'
miRNA:   3'- -CGa---GUGUUGCACGCAGUGCACG--CCGC- -5'
24155 5' -55.1 NC_005263.2 + 37173 0.78 0.155732
Target:  5'- cGCUCACcccgcACGacGCGaUCACGUGCGGCa -3'
miRNA:   3'- -CGAGUGu----UGCa-CGC-AGUGCACGCCGc -5'
24155 5' -55.1 NC_005263.2 + 37398 0.78 0.155732
Target:  5'- gGCUgCGCGACGUGCaUCGCGUcgcGCGGCc -3'
miRNA:   3'- -CGA-GUGUUGCACGcAGUGCA---CGCCGc -5'
24155 5' -55.1 NC_005263.2 + 47395 0.74 0.293871
Target:  5'- cCUCGCcACG-GCGcUCGCGgGCGGCGg -3'
miRNA:   3'- cGAGUGuUGCaCGC-AGUGCaCGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 19763 0.73 0.324535
Target:  5'- uGCUgACgAACGUGCGccUCACGggcucgGCGGCc -3'
miRNA:   3'- -CGAgUG-UUGCACGC--AGUGCa-----CGCCGc -5'
24155 5' -55.1 NC_005263.2 + 24776 0.72 0.373986
Target:  5'- cGCUCACgGGCG-GCGUCggcggcucgccggGCGUcgGCGGCGc -3'
miRNA:   3'- -CGAGUG-UUGCaCGCAG-------------UGCA--CGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 29291 0.72 0.383753
Target:  5'- aGCUgCACGGCGgccgggucggcaUGCGcaUCGCGcGCGGCGa -3'
miRNA:   3'- -CGA-GUGUUGC------------ACGC--AGUGCaCGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 31390 0.71 0.402864
Target:  5'- uGCUCGCGcgguAgGUGCGcugcagcugcugcagCAUGUGCGGCa -3'
miRNA:   3'- -CGAGUGU----UgCACGCa--------------GUGCACGCCGc -5'
24155 5' -55.1 NC_005263.2 + 18611 0.71 0.430223
Target:  5'- cGC-CGCAGCG-GCGuUCGCGgcagGUGGCa -3'
miRNA:   3'- -CGaGUGUUGCaCGC-AGUGCa---CGCCGc -5'
24155 5' -55.1 NC_005263.2 + 19943 0.7 0.449715
Target:  5'- aGCUUcCGACGauuaUGCGcUCGCGUGCucGGCGc -3'
miRNA:   3'- -CGAGuGUUGC----ACGC-AGUGCACG--CCGC- -5'
24155 5' -55.1 NC_005263.2 + 29698 0.7 0.459642
Target:  5'- gGCgUCAgGAuCGUGCGcaccCGCGUGCcGGCGa -3'
miRNA:   3'- -CG-AGUgUU-GCACGCa---GUGCACG-CCGC- -5'
24155 5' -55.1 NC_005263.2 + 16361 0.7 0.469684
Target:  5'- aGCgCGCGGCc-GCGUCGCucgGCGGCGg -3'
miRNA:   3'- -CGaGUGUUGcaCGCAGUGca-CGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 24538 0.7 0.490095
Target:  5'- ---gGCAACGgcgGCGgCGCGgGCGGCGg -3'
miRNA:   3'- cgagUGUUGCa--CGCaGUGCaCGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 18936 0.69 0.51091
Target:  5'- cGUUCugaacCGACGccCGcCACGUGCGGCGu -3'
miRNA:   3'- -CGAGu----GUUGCacGCaGUGCACGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 25994 0.69 0.532084
Target:  5'- cGCUUGCAGCGUGCcggcggcagccGUCACGccUGGUGu -3'
miRNA:   3'- -CGAGUGUUGCACG-----------CAGUGCacGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 2858 0.68 0.586239
Target:  5'- aGCgUCGCAGCGUucgcgaacGaCGUCGCa-GCGGCGa -3'
miRNA:   3'- -CG-AGUGUUGCA--------C-GCAGUGcaCGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 37598 0.68 0.595019
Target:  5'- gGCUCggugcACAACGUGCGcuUCgACGgcaagcaccugcGCGGCGa -3'
miRNA:   3'- -CGAG-----UGUUGCACGC--AG-UGCa-----------CGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 26195 0.68 0.597218
Target:  5'- gGCcgCGCGGCG-GcCG-CGCGaUGCGGCGg -3'
miRNA:   3'- -CGa-GUGUUGCaC-GCaGUGC-ACGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 43220 0.68 0.597218
Target:  5'- -aUCGCAGCGcGCGcuaCAUGgugaGCGGCGg -3'
miRNA:   3'- cgAGUGUUGCaCGCa--GUGCa---CGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.