miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24155 5' -55.1 NC_005263.2 + 37173 0.78 0.155732
Target:  5'- cGCUCACcccgcACGacGCGaUCACGUGCGGCa -3'
miRNA:   3'- -CGAGUGu----UGCa-CGC-AGUGCACGCCGc -5'
24155 5' -55.1 NC_005263.2 + 13323 0.66 0.685325
Target:  5'- gGCaUCGCGAgcUGCGUCAUGcugaUGCcGGCGa -3'
miRNA:   3'- -CG-AGUGUUgcACGCAGUGC----ACG-CCGC- -5'
24155 5' -55.1 NC_005263.2 + 14436 0.66 0.686417
Target:  5'- uGCg-ACGGCGUGCGcgCGCGccucuuucgagccgaGCGGCGg -3'
miRNA:   3'- -CGagUGUUGCACGCa-GUGCa--------------CGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 44404 0.66 0.717811
Target:  5'- cGCgCGCGGCauugGCGUCgACGUcgaaGCGGCa -3'
miRNA:   3'- -CGaGUGUUGca--CGCAG-UGCA----CGCCGc -5'
24155 5' -55.1 NC_005263.2 + 18611 0.71 0.430223
Target:  5'- cGC-CGCAGCG-GCGuUCGCGgcagGUGGCa -3'
miRNA:   3'- -CGaGUGUUGCaCGC-AGUGCa---CGCCGc -5'
24155 5' -55.1 NC_005263.2 + 19943 0.7 0.449715
Target:  5'- aGCUUcCGACGauuaUGCGcUCGCGUGCucGGCGc -3'
miRNA:   3'- -CGAGuGUUGC----ACGC-AGUGCACG--CCGC- -5'
24155 5' -55.1 NC_005263.2 + 25994 0.69 0.532084
Target:  5'- cGCUUGCAGCGUGCcggcggcagccGUCACGccUGGUGu -3'
miRNA:   3'- -CGAGUGUUGCACG-----------CAGUGCacGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 2858 0.68 0.586239
Target:  5'- aGCgUCGCAGCGUucgcgaacGaCGUCGCa-GCGGCGa -3'
miRNA:   3'- -CG-AGUGUUGCA--------C-GCAGUGcaCGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 19682 0.68 0.608227
Target:  5'- uGCcCGCGACGUucaCG-CGCGUGCcGGCGc -3'
miRNA:   3'- -CGaGUGUUGCAc--GCaGUGCACG-CCGC- -5'
24155 5' -55.1 NC_005263.2 + 25701 0.66 0.674379
Target:  5'- gGCgagCACGGCG-GCGcgUACGUucGCGGCc -3'
miRNA:   3'- -CGa--GUGUUGCaCGCa-GUGCA--CGCCGc -5'
24155 5' -55.1 NC_005263.2 + 13079 0.67 0.619257
Target:  5'- cGCUUGCA--GUGCGUCGaggcCGgacaGCGGCGu -3'
miRNA:   3'- -CGAGUGUugCACGCAGU----GCa---CGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 9783 0.68 0.597218
Target:  5'- -aUCGCAccgaACGgggGCGccucgcCGCGUGCGGCa -3'
miRNA:   3'- cgAGUGU----UGCa--CGCa-----GUGCACGCCGc -5'
24155 5' -55.1 NC_005263.2 + 37398 0.78 0.155732
Target:  5'- gGCUgCGCGACGUGCaUCGCGUcgcGCGGCc -3'
miRNA:   3'- -CGA-GUGUUGCACGcAGUGCA---CGCCGc -5'
24155 5' -55.1 NC_005263.2 + 15703 0.67 0.630299
Target:  5'- aGCUCGCAGCGacuacggGCGguUCGaccaGcGCGGCGu -3'
miRNA:   3'- -CGAGUGUUGCa------CGC--AGUg---CaCGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 29291 0.72 0.383753
Target:  5'- aGCUgCACGGCGgccgggucggcaUGCGcaUCGCGcGCGGCGa -3'
miRNA:   3'- -CGA-GUGUUGC------------ACGC--AGUGCaCGCCGC- -5'
24155 5' -55.1 NC_005263.2 + 11389 0.68 0.597218
Target:  5'- uCUCGCGGCcUGCGcgCACGUgguucgggcGCGGCu -3'
miRNA:   3'- cGAGUGUUGcACGCa-GUGCA---------CGCCGc -5'
24155 5' -55.1 NC_005263.2 + 12161 0.67 0.638029
Target:  5'- uGCaCGCAGCGUcaacgaucgcggccGUGUCGCGaugaagcggaUGCGGCa -3'
miRNA:   3'- -CGaGUGUUGCA--------------CGCAGUGC----------ACGCCGc -5'
24155 5' -55.1 NC_005263.2 + 17185 0.66 0.685325
Target:  5'- aGCUCGCGGCGUacGcCGUCGCcgcgcucgacucGUGCacgcugcaGGCGa -3'
miRNA:   3'- -CGAGUGUUGCA--C-GCAGUG------------CACG--------CCGC- -5'
24155 5' -55.1 NC_005263.2 + 31390 0.71 0.402864
Target:  5'- uGCUCGCGcgguAgGUGCGcugcagcugcugcagCAUGUGCGGCa -3'
miRNA:   3'- -CGAGUGU----UgCACGCa--------------GUGCACGCCGc -5'
24155 5' -55.1 NC_005263.2 + 18936 0.69 0.51091
Target:  5'- cGUUCugaacCGACGccCGcCACGUGCGGCGu -3'
miRNA:   3'- -CGAGu----GUUGCacGCaGUGCACGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.