miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24160 5' -58.5 NC_005263.2 + 30205 1.1 0.000456
Target:  5'- gCGCGCCGAUCUGCGCGCCGUUCACGGu -3'
miRNA:   3'- -GCGCGGCUAGACGCGCGGCAAGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 35524 0.79 0.080767
Target:  5'- gCGCGCCGA-CUGCGC-CCGgcggcgCGCGGg -3'
miRNA:   3'- -GCGCGGCUaGACGCGcGGCaa----GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 37449 0.78 0.098127
Target:  5'- gCGCGCgCGGUCUGCGCGgCGUcCAUGu -3'
miRNA:   3'- -GCGCG-GCUAGACGCGCgGCAaGUGCc -5'
24160 5' -58.5 NC_005263.2 + 9612 0.78 0.098127
Target:  5'- uCGaCGCCGAUCUGCgugaGCGCC--UCGCGGu -3'
miRNA:   3'- -GC-GCGGCUAGACG----CGCGGcaAGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 25718 0.77 0.118971
Target:  5'- gGCGCCucuuuccugGcgCUGCGCGCCGUgCACGa -3'
miRNA:   3'- gCGCGG---------CuaGACGCGCGGCAaGUGCc -5'
24160 5' -58.5 NC_005263.2 + 18879 0.76 0.132667
Target:  5'- gCGCGCCG--CUGCGCGCCG---ACGGc -3'
miRNA:   3'- -GCGCGGCuaGACGCGCGGCaagUGCC- -5'
24160 5' -58.5 NC_005263.2 + 20719 0.76 0.140047
Target:  5'- aCGCaGCCGGUCaGCGCGCCGgcCGCc- -3'
miRNA:   3'- -GCG-CGGCUAGaCGCGCGGCaaGUGcc -5'
24160 5' -58.5 NC_005263.2 + 17921 0.75 0.142719
Target:  5'- gCGCGCCccGggCUccaacgucaaagugGCGCGUCGUUCGCGGu -3'
miRNA:   3'- -GCGCGG--CuaGA--------------CGCGCGGCAAGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 1426 0.75 0.16017
Target:  5'- gCGCGCCGccuuggCUGCGCGCgaGgcuUCGCGGc -3'
miRNA:   3'- -GCGCGGCua----GACGCGCGg-Ca--AGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 41687 0.75 0.16017
Target:  5'- gGCGCgGA-CUGCG-GCCGUaCGCGGg -3'
miRNA:   3'- gCGCGgCUaGACGCgCGGCAaGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 30208 0.74 0.170728
Target:  5'- -aUGCUGAUCgGCGCGCCGccggucgacugaucgUUCGCGGc -3'
miRNA:   3'- gcGCGGCUAGaCGCGCGGC---------------AAGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 29247 0.74 0.173463
Target:  5'- gCGCGCCGAggcaCGCGuuGUUCACGcGg -3'
miRNA:   3'- -GCGCGGCUagacGCGCggCAAGUGC-C- -5'
24160 5' -58.5 NC_005263.2 + 18598 0.74 0.173463
Target:  5'- gCGCGCCGAcggacgCcGCaGCGgCGUUCGCGGc -3'
miRNA:   3'- -GCGCGGCUa-----GaCG-CGCgGCAAGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 20778 0.74 0.178108
Target:  5'- cCGCGCCgcuGAUCgucgGCGCGUCGggUCGCGc -3'
miRNA:   3'- -GCGCGG---CUAGa---CGCGCGGCa-AGUGCc -5'
24160 5' -58.5 NC_005263.2 + 9172 0.74 0.182864
Target:  5'- cCGUGCCGAUCaGCGCGaaGcgaCGCGGg -3'
miRNA:   3'- -GCGCGGCUAGaCGCGCggCaa-GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 18744 0.74 0.182864
Target:  5'- aGCGCCaGAUCgGCGCGaUCGUagGCGGc -3'
miRNA:   3'- gCGCGG-CUAGaCGCGC-GGCAagUGCC- -5'
24160 5' -58.5 NC_005263.2 + 3319 0.74 0.186749
Target:  5'- cCGCGCgGuguucaacGUCUGCGCGCCGccggcgccgcgCGCGGu -3'
miRNA:   3'- -GCGCGgC--------UAGACGCGCGGCaa---------GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 25177 0.73 0.197809
Target:  5'- -uCGCCGGUCggauuugcgUGCGUGCCGaugaaaaugUUCACGGg -3'
miRNA:   3'- gcGCGGCUAG---------ACGCGCGGC---------AAGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 12490 0.73 0.197809
Target:  5'- gCGCGCauugCGGcaucCUGCGCGCCGgcuucgCGCGGg -3'
miRNA:   3'- -GCGCG----GCUa---GACGCGCGGCaa----GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 11897 0.73 0.219383
Target:  5'- gGCGCCGGgcgcCUGCGCGCUGgcgUCcuguGCGa -3'
miRNA:   3'- gCGCGGCUa---GACGCGCGGCa--AG----UGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.