miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24160 5' -58.5 NC_005263.2 + 874 0.66 0.537965
Target:  5'- uCGUGCCGGcCgGCGCuUCGUUCagcGCGGc -3'
miRNA:   3'- -GCGCGGCUaGaCGCGcGGCAAG---UGCC- -5'
24160 5' -58.5 NC_005263.2 + 968 0.69 0.392622
Target:  5'- aGCGgCGGUCgccUGCGCGUCGg--ACGGc -3'
miRNA:   3'- gCGCgGCUAG---ACGCGCGGCaagUGCC- -5'
24160 5' -58.5 NC_005263.2 + 1118 0.71 0.26195
Target:  5'- uCGCGCgCGAagUcCGCGCCGUgcugcgCACGGc -3'
miRNA:   3'- -GCGCG-GCUagAcGCGCGGCAa-----GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 1277 0.67 0.477015
Target:  5'- gCGCGCCGccugGCGCGCguugCGUUaCGCGa -3'
miRNA:   3'- -GCGCGGCuagaCGCGCG----GCAA-GUGCc -5'
24160 5' -58.5 NC_005263.2 + 1426 0.75 0.16017
Target:  5'- gCGCGCCGccuuggCUGCGCGCgaGgcuUCGCGGc -3'
miRNA:   3'- -GCGCGGCua----GACGCGCGg-Ca--AGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 1522 0.66 0.548399
Target:  5'- gGCGUCGAUgaGCagcuuGUGCCGUUCGauGc -3'
miRNA:   3'- gCGCGGCUAgaCG-----CGCGGCAAGUgcC- -5'
24160 5' -58.5 NC_005263.2 + 1966 0.66 0.514238
Target:  5'- cCGCGUCGAUCugcugcaguUGCGaguucguagcgucaCGCCGg-CGCGGa -3'
miRNA:   3'- -GCGCGGCUAG---------ACGC--------------GCGGCaaGUGCC- -5'
24160 5' -58.5 NC_005263.2 + 2244 0.68 0.451673
Target:  5'- aCGCGCCGAuguacguguaguuguUCgaGCGCaGCgCGUUCGCc- -3'
miRNA:   3'- -GCGCGGCU---------------AGa-CGCG-CG-GCAAGUGcc -5'
24160 5' -58.5 NC_005263.2 + 3178 0.7 0.310998
Target:  5'- gGCGCgGAauaacugccgCUGCGCGUCGgcgagCGCGGc -3'
miRNA:   3'- gCGCGgCUa---------GACGCGCGGCaa---GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 3319 0.74 0.186749
Target:  5'- cCGCGCgGuguucaacGUCUGCGCGCCGccggcgccgcgCGCGGu -3'
miRNA:   3'- -GCGCGgC--------UAGACGCGCGGCaa---------GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 3811 0.66 0.548399
Target:  5'- aGUGUCGAUCaGCGCGUauuUGUacgUGCGGg -3'
miRNA:   3'- gCGCGGCUAGaCGCGCG---GCAa--GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 4170 0.68 0.438336
Target:  5'- gCGCGCCGcgCU-CGUGCUGca-GCGGc -3'
miRNA:   3'- -GCGCGGCuaGAcGCGCGGCaagUGCC- -5'
24160 5' -58.5 NC_005263.2 + 4864 0.69 0.350122
Target:  5'- cCGUGCCGAUgccgCUGC-CGCCGcUCACc- -3'
miRNA:   3'- -GCGCGGCUA----GACGcGCGGCaAGUGcc -5'
24160 5' -58.5 NC_005263.2 + 4900 0.68 0.416925
Target:  5'- gCGCGCugCGAUa-GCGCGCCGUcgccauccaaaacaUCGCGc -3'
miRNA:   3'- -GCGCG--GCUAgaCGCGCGGCA--------------AGUGCc -5'
24160 5' -58.5 NC_005263.2 + 5912 0.66 0.548399
Target:  5'- aGCGCCcg---GCGCGgCGUgcgUACGGa -3'
miRNA:   3'- gCGCGGcuagaCGCGCgGCAa--GUGCC- -5'
24160 5' -58.5 NC_005263.2 + 6343 0.71 0.289164
Target:  5'- cCGCGCCGAUCUccucguugauCGCGCCGUgcCGCc- -3'
miRNA:   3'- -GCGCGGCUAGAc---------GCGCGGCAa-GUGcc -5'
24160 5' -58.5 NC_005263.2 + 6438 0.69 0.392622
Target:  5'- cCGCGCCcgacGAUCUGC-CGCCaGagCACGa -3'
miRNA:   3'- -GCGCGG----CUAGACGcGCGG-CaaGUGCc -5'
24160 5' -58.5 NC_005263.2 + 7032 0.72 0.25548
Target:  5'- aCGUGUCGAcgaUCgUGCGCGCCGUcuUCAUa- -3'
miRNA:   3'- -GCGCGGCU---AG-ACGCGCGGCA--AGUGcc -5'
24160 5' -58.5 NC_005263.2 + 8568 0.67 0.457457
Target:  5'- --aGCCGAUCgGCGUGUCGUccgUUACGc -3'
miRNA:   3'- gcgCGGCUAGaCGCGCGGCA---AGUGCc -5'
24160 5' -58.5 NC_005263.2 + 9172 0.74 0.182864
Target:  5'- cCGUGCCGAUCaGCGCGaaGcgaCGCGGg -3'
miRNA:   3'- -GCGCGGCUAGaCGCGCggCaa-GUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.