Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24164 | 3' | -53.8 | NC_005263.2 | + | 391 | 0.68 | 0.658553 |
Target: 5'- aGAAUUGC-CGAGCGCGuagagCGcACGAu -3' miRNA: 3'- -CUUGACGaGCUCGCGCuaca-GC-UGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 24086 | 0.68 | 0.658553 |
Target: 5'- cAGCUGC-CGAGCGCG---UCGGCa- -3' miRNA: 3'- cUUGACGaGCUCGCGCuacAGCUGcu -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 24300 | 0.68 | 0.658553 |
Target: 5'- cGAGCgauugGCUCGcGCGCGucgcaUCGGCGGu -3' miRNA: 3'- -CUUGa----CGAGCuCGCGCuac--AGCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 22051 | 0.68 | 0.669712 |
Target: 5'- cAGCaGCUCGAcGCaGCGAaGcUCGACGAg -3' miRNA: 3'- cUUGaCGAGCU-CG-CGCUaC-AGCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 30243 | 0.67 | 0.680833 |
Target: 5'- -cGCgGCgaagCGuGCGCGGUagucGUCGGCGAa -3' miRNA: 3'- cuUGaCGa---GCuCGCGCUA----CAGCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 5490 | 0.67 | 0.702921 |
Target: 5'- -uGCUGCUCGAcaggggGCGCGgcGagGAUGGu -3' miRNA: 3'- cuUGACGAGCU------CGCGCuaCagCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 36556 | 0.67 | 0.702921 |
Target: 5'- aAGCUcgUCGAGCGCGGcaaggUGaCGACGAa -3' miRNA: 3'- cUUGAcgAGCUCGCGCU-----ACaGCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 41349 | 0.67 | 0.702921 |
Target: 5'- cGAGCUcGCcCGGcGCGCGAUGgacgUGACGc -3' miRNA: 3'- -CUUGA-CGaGCU-CGCGCUACa---GCUGCu -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 31092 | 0.67 | 0.713863 |
Target: 5'- -cGCUGCUCGAGCGauaCGAacgcuUCGACa- -3' miRNA: 3'- cuUGACGAGCUCGC---GCUac---AGCUGcu -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 33095 | 0.67 | 0.724722 |
Target: 5'- uGAuCUGCUUGcGCGCGu--UCGGCGGa -3' miRNA: 3'- -CUuGACGAGCuCGCGCuacAGCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 9655 | 0.66 | 0.735486 |
Target: 5'- -cGCUG-UCGAGCGCaAUGUCGccgcCGAg -3' miRNA: 3'- cuUGACgAGCUCGCGcUACAGCu---GCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 30940 | 0.66 | 0.746142 |
Target: 5'- cGAGCUGCgcauucggcuucUCGGccGUGcCGAcGUCGACGAc -3' miRNA: 3'- -CUUGACG------------AGCU--CGC-GCUaCAGCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 36092 | 0.66 | 0.746142 |
Target: 5'- ----aGCUUGAGCGCGccGUCG-CGu -3' miRNA: 3'- cuugaCGAGCUCGCGCuaCAGCuGCu -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 30417 | 0.66 | 0.750371 |
Target: 5'- cGGCUGCagcaggucggugcggUCGAGCGCGAgcagcgUGagcgCGGCGGc -3' miRNA: 3'- cUUGACG---------------AGCUCGCGCU------ACa---GCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 1930 | 0.66 | 0.756678 |
Target: 5'- --uCUGCaCGAGCGCGccGgcacCGGCGAc -3' miRNA: 3'- cuuGACGaGCUCGCGCuaCa---GCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 31285 | 0.66 | 0.756678 |
Target: 5'- uGAAC-GCgUCGAGCGCG---UCGACGc -3' miRNA: 3'- -CUUGaCG-AGCUCGCGCuacAGCUGCu -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 43043 | 0.66 | 0.756678 |
Target: 5'- -cGCUGUUUG-GCGCGAcGcCGACGu -3' miRNA: 3'- cuUGACGAGCuCGCGCUaCaGCUGCu -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 30536 | 0.66 | 0.756678 |
Target: 5'- cGAGCaGCUCGAuGCGC--UGcUCGACGu -3' miRNA: 3'- -CUUGaCGAGCU-CGCGcuAC-AGCUGCu -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 43376 | 0.66 | 0.756678 |
Target: 5'- uGGCgUGCUCGcgGGCGCGAcGUacccgGACGAg -3' miRNA: 3'- cUUG-ACGAGC--UCGCGCUaCAg----CUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 13056 | 0.66 | 0.776324 |
Target: 5'- uGAugUGCUCGguuucacgGGCGUgucugccGGUGUCgGACGGc -3' miRNA: 3'- -CUugACGAGC--------UCGCG-------CUACAG-CUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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