miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24164 3' -53.8 NC_005263.2 + 28495 1.09 0.001245
Target:  5'- uGAACUGCUCGAGCGCGAUGUCGACGAa -3'
miRNA:   3'- -CUUGACGAGCUCGCGCUACAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 31509 0.76 0.232627
Target:  5'- -uGCUGCUCGcGCGCGAgccCGGCGAa -3'
miRNA:   3'- cuUGACGAGCuCGCGCUacaGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 17585 0.74 0.325227
Target:  5'- cGAGCUGCUCGcGCaGCGggGUC-ACGAc -3'
miRNA:   3'- -CUUGACGAGCuCG-CGCuaCAGcUGCU- -5'
24164 3' -53.8 NC_005263.2 + 45000 0.73 0.367499
Target:  5'- aGAACUgGUUCG-GCGCGcUGUCGAaCGAg -3'
miRNA:   3'- -CUUGA-CGAGCuCGCGCuACAGCU-GCU- -5'
24164 3' -53.8 NC_005263.2 + 28635 0.71 0.451557
Target:  5'- -uACUGCUCGAGCGCcGUG-CGgaacgccGCGAg -3'
miRNA:   3'- cuUGACGAGCUCGCGcUACaGC-------UGCU- -5'
24164 3' -53.8 NC_005263.2 + 37772 0.71 0.48322
Target:  5'- aAGCUGCcgCGccuGCGCGAgaUCGACGAg -3'
miRNA:   3'- cUUGACGa-GCu--CGCGCUacAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 25551 0.71 0.493661
Target:  5'- cGAGUUGaucgCGAGCGCGAcGUCGGCGu -3'
miRNA:   3'- -CUUGACga--GCUCGCGCUaCAGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 30799 0.71 0.493661
Target:  5'- -uGCUGCUCG-GCgGCGAcgUGcUCGGCGGa -3'
miRNA:   3'- cuUGACGAGCuCG-CGCU--AC-AGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 2959 0.7 0.525573
Target:  5'- cAGCUGCgCGAGCGUGAUgcccGUCaGCGGa -3'
miRNA:   3'- cUUGACGaGCUCGCGCUA----CAGcUGCU- -5'
24164 3' -53.8 NC_005263.2 + 7015 0.7 0.536386
Target:  5'- cGGAUUGg-CG-GCGCGAaacgUGUCGACGAu -3'
miRNA:   3'- -CUUGACgaGCuCGCGCU----ACAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 1492 0.7 0.547275
Target:  5'- aGAuUUGCUCGAacuGCGCGAg--CGACGGc -3'
miRNA:   3'- -CUuGACGAGCU---CGCGCUacaGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 24689 0.7 0.547275
Target:  5'- cGAGC-GCaUGAGCGCGuUGaUCGACGGg -3'
miRNA:   3'- -CUUGaCGaGCUCGCGCuAC-AGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 41477 0.7 0.547275
Target:  5'- -cGCUGCUCGA-CGCGGgcgaGUCGGCc- -3'
miRNA:   3'- cuUGACGAGCUcGCGCUa---CAGCUGcu -5'
24164 3' -53.8 NC_005263.2 + 11514 0.7 0.547275
Target:  5'- -cACUGgUCGcGCGCGAUGaaGGCGGc -3'
miRNA:   3'- cuUGACgAGCuCGCGCUACagCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 29561 0.69 0.568148
Target:  5'- cGGGCUGCgCGAacuucuugaacgcGCucGCGGUGUCGACGc -3'
miRNA:   3'- -CUUGACGaGCU-------------CG--CGCUACAGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 6202 0.69 0.569253
Target:  5'- cGGGCUGCUCGGGCGa---GUUGAuCGGa -3'
miRNA:   3'- -CUUGACGAGCUCGCgcuaCAGCU-GCU- -5'
24164 3' -53.8 NC_005263.2 + 32663 0.68 0.624969
Target:  5'- cGGAUgGCgCGGGUcggcgGCGAUGUCGACGu -3'
miRNA:   3'- -CUUGaCGaGCUCG-----CGCUACAGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 15315 0.68 0.636171
Target:  5'- cGAGCUGCgCGAgGCGCGG-GcCGACa- -3'
miRNA:   3'- -CUUGACGaGCU-CGCGCUaCaGCUGcu -5'
24164 3' -53.8 NC_005263.2 + 37367 0.68 0.64737
Target:  5'- -cGCaUGCgCGuGCGCGAcugcaucuUGUCGACGGc -3'
miRNA:   3'- cuUG-ACGaGCuCGCGCU--------ACAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 18941 0.68 0.658553
Target:  5'- cGAGC-GCUCGAGCGCGccgGUuCGAgCGc -3'
miRNA:   3'- -CUUGaCGAGCUCGCGCua-CA-GCU-GCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.