Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24164 | 3' | -53.8 | NC_005263.2 | + | 391 | 0.68 | 0.658553 |
Target: 5'- aGAAUUGC-CGAGCGCGuagagCGcACGAu -3' miRNA: 3'- -CUUGACGaGCUCGCGCuaca-GC-UGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 1492 | 0.7 | 0.547275 |
Target: 5'- aGAuUUGCUCGAacuGCGCGAg--CGACGGc -3' miRNA: 3'- -CUuGACGAGCU---CGCGCUacaGCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 1930 | 0.66 | 0.756678 |
Target: 5'- --uCUGCaCGAGCGCGccGgcacCGGCGAc -3' miRNA: 3'- cuuGACGaGCUCGCGCuaCa---GCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 2959 | 0.7 | 0.525573 |
Target: 5'- cAGCUGCgCGAGCGUGAUgcccGUCaGCGGa -3' miRNA: 3'- cUUGACGaGCUCGCGCUA----CAGcUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 5490 | 0.67 | 0.702921 |
Target: 5'- -uGCUGCUCGAcaggggGCGCGgcGagGAUGGu -3' miRNA: 3'- cuUGACGAGCU------CGCGCuaCagCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 6202 | 0.69 | 0.569253 |
Target: 5'- cGGGCUGCUCGGGCGa---GUUGAuCGGa -3' miRNA: 3'- -CUUGACGAGCUCGCgcuaCAGCU-GCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 7015 | 0.7 | 0.536386 |
Target: 5'- cGGAUUGg-CG-GCGCGAaacgUGUCGACGAu -3' miRNA: 3'- -CUUGACgaGCuCGCGCU----ACAGCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 9655 | 0.66 | 0.735486 |
Target: 5'- -cGCUG-UCGAGCGCaAUGUCGccgcCGAg -3' miRNA: 3'- cuUGACgAGCUCGCGcUACAGCu---GCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 10063 | 0.66 | 0.777343 |
Target: 5'- -cGCUGCaugCGccuGCGCGuuuUGcUCGACGAg -3' miRNA: 3'- cuUGACGa--GCu--CGCGCu--AC-AGCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 11514 | 0.7 | 0.547275 |
Target: 5'- -cACUGgUCGcGCGCGAUGaaGGCGGc -3' miRNA: 3'- cuUGACgAGCuCGCGCUACagCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 13056 | 0.66 | 0.776324 |
Target: 5'- uGAugUGCUCGguuucacgGGCGUgucugccGGUGUCgGACGGc -3' miRNA: 3'- -CUugACGAGC--------UCGCG-------CUACAG-CUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 15315 | 0.68 | 0.636171 |
Target: 5'- cGAGCUGCgCGAgGCGCGG-GcCGACa- -3' miRNA: 3'- -CUUGACGaGCU-CGCGCUaCaGCUGcu -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 15780 | 0.66 | 0.777343 |
Target: 5'- cAGCUGCUCGAcgaccacuGCGCGcUGcUCGucCGAc -3' miRNA: 3'- cUUGACGAGCU--------CGCGCuAC-AGCu-GCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 17585 | 0.74 | 0.325227 |
Target: 5'- cGAGCUGCUCGcGCaGCGggGUC-ACGAc -3' miRNA: 3'- -CUUGACGAGCuCG-CGCuaCAGcUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 18941 | 0.68 | 0.658553 |
Target: 5'- cGAGC-GCUCGAGCGCGccgGUuCGAgCGc -3' miRNA: 3'- -CUUGaCGAGCUCGCGCua-CA-GCU-GCu -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 19826 | 0.66 | 0.777343 |
Target: 5'- -uACUGCacaaggugagUCGcGCGCGA--UCGACGAu -3' miRNA: 3'- cuUGACG----------AGCuCGCGCUacAGCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 22051 | 0.68 | 0.669712 |
Target: 5'- cAGCaGCUCGAcGCaGCGAaGcUCGACGAg -3' miRNA: 3'- cUUGaCGAGCU-CG-CGCUaC-AGCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 24086 | 0.68 | 0.658553 |
Target: 5'- cAGCUGC-CGAGCGCG---UCGGCa- -3' miRNA: 3'- cUUGACGaGCUCGCGCuacAGCUGcu -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 24300 | 0.68 | 0.658553 |
Target: 5'- cGAGCgauugGCUCGcGCGCGucgcaUCGGCGGu -3' miRNA: 3'- -CUUGa----CGAGCuCGCGCuac--AGCUGCU- -5' |
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24164 | 3' | -53.8 | NC_005263.2 | + | 24689 | 0.7 | 0.547275 |
Target: 5'- cGAGC-GCaUGAGCGCGuUGaUCGACGGg -3' miRNA: 3'- -CUUGaCGaGCUCGCGCuAC-AGCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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