miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24164 3' -53.8 NC_005263.2 + 31509 0.76 0.232627
Target:  5'- -uGCUGCUCGcGCGCGAgccCGGCGAa -3'
miRNA:   3'- cuUGACGAGCuCGCGCUacaGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 1930 0.66 0.756678
Target:  5'- --uCUGCaCGAGCGCGccGgcacCGGCGAc -3'
miRNA:   3'- cuuGACGaGCUCGCGCuaCa---GCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 32136 0.66 0.777343
Target:  5'- aGAGCaUGUUCGAGCccuuguccgcccGCG-UGUCGuGCGAc -3'
miRNA:   3'- -CUUG-ACGAGCUCG------------CGCuACAGC-UGCU- -5'
24164 3' -53.8 NC_005263.2 + 44650 0.65 0.786445
Target:  5'- cGAGCUGCgccUCGAuGCGUcgcgcgcgccgaaGAaGUCGGCGGc -3'
miRNA:   3'- -CUUGACG---AGCU-CGCG-------------CUaCAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 2959 0.7 0.525573
Target:  5'- cAGCUGCgCGAGCGUGAUgcccGUCaGCGGa -3'
miRNA:   3'- cUUGACGaGCUCGCGCUA----CAGcUGCU- -5'
24164 3' -53.8 NC_005263.2 + 1492 0.7 0.547275
Target:  5'- aGAuUUGCUCGAacuGCGCGAg--CGACGGc -3'
miRNA:   3'- -CUuGACGAGCU---CGCGCUacaGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 41477 0.7 0.547275
Target:  5'- -cGCUGCUCGA-CGCGGgcgaGUCGGCc- -3'
miRNA:   3'- cuUGACGAGCUcGCGCUa---CAGCUGcu -5'
24164 3' -53.8 NC_005263.2 + 24689 0.7 0.547275
Target:  5'- cGAGC-GCaUGAGCGCGuUGaUCGACGGg -3'
miRNA:   3'- -CUUGaCGaGCUCGCGCuAC-AGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 24086 0.68 0.658553
Target:  5'- cAGCUGC-CGAGCGCG---UCGGCa- -3'
miRNA:   3'- cUUGACGaGCUCGCGCuacAGCUGcu -5'
24164 3' -53.8 NC_005263.2 + 9655 0.66 0.735486
Target:  5'- -cGCUG-UCGAGCGCaAUGUCGccgcCGAg -3'
miRNA:   3'- cuUGACgAGCUCGCGcUACAGCu---GCU- -5'
24164 3' -53.8 NC_005263.2 + 22051 0.68 0.669712
Target:  5'- cAGCaGCUCGAcGCaGCGAaGcUCGACGAg -3'
miRNA:   3'- cUUGaCGAGCU-CG-CGCUaC-AGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 391 0.68 0.658553
Target:  5'- aGAAUUGC-CGAGCGCGuagagCGcACGAu -3'
miRNA:   3'- -CUUGACGaGCUCGCGCuaca-GC-UGCU- -5'
24164 3' -53.8 NC_005263.2 + 17585 0.74 0.325227
Target:  5'- cGAGCUGCUCGcGCaGCGggGUC-ACGAc -3'
miRNA:   3'- -CUUGACGAGCuCG-CGCuaCAGcUGCU- -5'
24164 3' -53.8 NC_005263.2 + 30243 0.67 0.680833
Target:  5'- -cGCgGCgaagCGuGCGCGGUagucGUCGGCGAa -3'
miRNA:   3'- cuUGaCGa---GCuCGCGCUA----CAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 37772 0.71 0.48322
Target:  5'- aAGCUGCcgCGccuGCGCGAgaUCGACGAg -3'
miRNA:   3'- cUUGACGa-GCu--CGCGCUacAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 32663 0.68 0.624969
Target:  5'- cGGAUgGCgCGGGUcggcgGCGAUGUCGACGu -3'
miRNA:   3'- -CUUGaCGaGCUCG-----CGCUACAGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 41349 0.67 0.702921
Target:  5'- cGAGCUcGCcCGGcGCGCGAUGgacgUGACGc -3'
miRNA:   3'- -CUUGA-CGaGCU-CGCGCUACa---GCUGCu -5'
24164 3' -53.8 NC_005263.2 + 31285 0.66 0.756678
Target:  5'- uGAAC-GCgUCGAGCGCG---UCGACGc -3'
miRNA:   3'- -CUUGaCG-AGCUCGCGCuacAGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 25551 0.71 0.493661
Target:  5'- cGAGUUGaucgCGAGCGCGAcGUCGGCGu -3'
miRNA:   3'- -CUUGACga--GCUCGCGCUaCAGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 11514 0.7 0.547275
Target:  5'- -cACUGgUCGcGCGCGAUGaaGGCGGc -3'
miRNA:   3'- cuUGACgAGCuCGCGCUACagCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.