miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24164 3' -53.8 NC_005263.2 + 25551 0.71 0.493661
Target:  5'- cGAGUUGaucgCGAGCGCGAcGUCGGCGu -3'
miRNA:   3'- -CUUGACga--GCUCGCGCUaCAGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 28495 1.09 0.001245
Target:  5'- uGAACUGCUCGAGCGCGAUGUCGACGAa -3'
miRNA:   3'- -CUUGACGAGCUCGCGCUACAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 28635 0.71 0.451557
Target:  5'- -uACUGCUCGAGCGCcGUG-CGgaacgccGCGAg -3'
miRNA:   3'- cuUGACGAGCUCGCGcUACaGC-------UGCU- -5'
24164 3' -53.8 NC_005263.2 + 29561 0.69 0.568148
Target:  5'- cGGGCUGCgCGAacuucuugaacgcGCucGCGGUGUCGACGc -3'
miRNA:   3'- -CUUGACGaGCU-------------CG--CGCUACAGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 30243 0.67 0.680833
Target:  5'- -cGCgGCgaagCGuGCGCGGUagucGUCGGCGAa -3'
miRNA:   3'- cuUGaCGa---GCuCGCGCUA----CAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 30417 0.66 0.750371
Target:  5'- cGGCUGCagcaggucggugcggUCGAGCGCGAgcagcgUGagcgCGGCGGc -3'
miRNA:   3'- cUUGACG---------------AGCUCGCGCU------ACa---GCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 30536 0.66 0.756678
Target:  5'- cGAGCaGCUCGAuGCGC--UGcUCGACGu -3'
miRNA:   3'- -CUUGaCGAGCU-CGCGcuAC-AGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 30799 0.71 0.493661
Target:  5'- -uGCUGCUCG-GCgGCGAcgUGcUCGGCGGa -3'
miRNA:   3'- cuUGACGAGCuCG-CGCU--AC-AGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 30940 0.66 0.746142
Target:  5'- cGAGCUGCgcauucggcuucUCGGccGUGcCGAcGUCGACGAc -3'
miRNA:   3'- -CUUGACG------------AGCU--CGC-GCUaCAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 31092 0.67 0.713863
Target:  5'- -cGCUGCUCGAGCGauaCGAacgcuUCGACa- -3'
miRNA:   3'- cuUGACGAGCUCGC---GCUac---AGCUGcu -5'
24164 3' -53.8 NC_005263.2 + 31285 0.66 0.756678
Target:  5'- uGAAC-GCgUCGAGCGCG---UCGACGc -3'
miRNA:   3'- -CUUGaCG-AGCUCGCGCuacAGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 31509 0.76 0.232627
Target:  5'- -uGCUGCUCGcGCGCGAgccCGGCGAa -3'
miRNA:   3'- cuUGACGAGCuCGCGCUacaGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 32136 0.66 0.777343
Target:  5'- aGAGCaUGUUCGAGCccuuguccgcccGCG-UGUCGuGCGAc -3'
miRNA:   3'- -CUUG-ACGAGCUCG------------CGCuACAGC-UGCU- -5'
24164 3' -53.8 NC_005263.2 + 32663 0.68 0.624969
Target:  5'- cGGAUgGCgCGGGUcggcgGCGAUGUCGACGu -3'
miRNA:   3'- -CUUGaCGaGCUCG-----CGCUACAGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 33095 0.67 0.724722
Target:  5'- uGAuCUGCUUGcGCGCGu--UCGGCGGa -3'
miRNA:   3'- -CUuGACGAGCuCGCGCuacAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 36092 0.66 0.746142
Target:  5'- ----aGCUUGAGCGCGccGUCG-CGu -3'
miRNA:   3'- cuugaCGAGCUCGCGCuaCAGCuGCu -5'
24164 3' -53.8 NC_005263.2 + 36556 0.67 0.702921
Target:  5'- aAGCUcgUCGAGCGCGGcaaggUGaCGACGAa -3'
miRNA:   3'- cUUGAcgAGCUCGCGCU-----ACaGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 37367 0.68 0.64737
Target:  5'- -cGCaUGCgCGuGCGCGAcugcaucuUGUCGACGGc -3'
miRNA:   3'- cuUG-ACGaGCuCGCGCU--------ACAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 37772 0.71 0.48322
Target:  5'- aAGCUGCcgCGccuGCGCGAgaUCGACGAg -3'
miRNA:   3'- cUUGACGa-GCu--CGCGCUacAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 41349 0.67 0.702921
Target:  5'- cGAGCUcGCcCGGcGCGCGAUGgacgUGACGc -3'
miRNA:   3'- -CUUGA-CGaGCU-CGCGCUACa---GCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.