miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24164 3' -53.8 NC_005263.2 + 44650 0.65 0.786445
Target:  5'- cGAGCUGCgccUCGAuGCGUcgcgcgcgccgaaGAaGUCGGCGGc -3'
miRNA:   3'- -CUUGACG---AGCU-CGCG-------------CUaCAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 9655 0.66 0.735486
Target:  5'- -cGCUG-UCGAGCGCaAUGUCGccgcCGAg -3'
miRNA:   3'- cuUGACgAGCUCGCGcUACAGCu---GCU- -5'
24164 3' -53.8 NC_005263.2 + 41349 0.67 0.702921
Target:  5'- cGAGCUcGCcCGGcGCGCGAUGgacgUGACGc -3'
miRNA:   3'- -CUUGA-CGaGCU-CGCGCUACa---GCUGCu -5'
24164 3' -53.8 NC_005263.2 + 25551 0.71 0.493661
Target:  5'- cGAGUUGaucgCGAGCGCGAcGUCGGCGu -3'
miRNA:   3'- -CUUGACga--GCUCGCGCUaCAGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 30940 0.66 0.746142
Target:  5'- cGAGCUGCgcauucggcuucUCGGccGUGcCGAcGUCGACGAc -3'
miRNA:   3'- -CUUGACG------------AGCU--CGC-GCUaCAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 29561 0.69 0.568148
Target:  5'- cGGGCUGCgCGAacuucuugaacgcGCucGCGGUGUCGACGc -3'
miRNA:   3'- -CUUGACGaGCU-------------CG--CGCUACAGCUGCu -5'
24164 3' -53.8 NC_005263.2 + 28495 1.09 0.001245
Target:  5'- uGAACUGCUCGAGCGCGAUGUCGACGAa -3'
miRNA:   3'- -CUUGACGAGCUCGCGCUACAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 30417 0.66 0.750371
Target:  5'- cGGCUGCagcaggucggugcggUCGAGCGCGAgcagcgUGagcgCGGCGGc -3'
miRNA:   3'- cUUGACG---------------AGCUCGCGCU------ACa---GCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 36092 0.66 0.746142
Target:  5'- ----aGCUUGAGCGCGccGUCG-CGu -3'
miRNA:   3'- cuugaCGAGCUCGCGCuaCAGCuGCu -5'
24164 3' -53.8 NC_005263.2 + 31092 0.67 0.713863
Target:  5'- -cGCUGCUCGAGCGauaCGAacgcuUCGACa- -3'
miRNA:   3'- cuUGACGAGCUCGC---GCUac---AGCUGcu -5'
24164 3' -53.8 NC_005263.2 + 36556 0.67 0.702921
Target:  5'- aAGCUcgUCGAGCGCGGcaaggUGaCGACGAa -3'
miRNA:   3'- cUUGAcgAGCUCGCGCU-----ACaGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 5490 0.67 0.702921
Target:  5'- -uGCUGCUCGAcaggggGCGCGgcGagGAUGGu -3'
miRNA:   3'- cuUGACGAGCU------CGCGCuaCagCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 18941 0.68 0.658553
Target:  5'- cGAGC-GCUCGAGCGCGccgGUuCGAgCGc -3'
miRNA:   3'- -CUUGaCGAGCUCGCGCua-CA-GCU-GCu -5'
24164 3' -53.8 NC_005263.2 + 37367 0.68 0.64737
Target:  5'- -cGCaUGCgCGuGCGCGAcugcaucuUGUCGACGGc -3'
miRNA:   3'- cuUG-ACGaGCuCGCGCU--------ACAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 15315 0.68 0.636171
Target:  5'- cGAGCUGCgCGAgGCGCGG-GcCGACa- -3'
miRNA:   3'- -CUUGACGaGCU-CGCGCUaCaGCUGcu -5'
24164 3' -53.8 NC_005263.2 + 6202 0.69 0.569253
Target:  5'- cGGGCUGCUCGGGCGa---GUUGAuCGGa -3'
miRNA:   3'- -CUUGACGAGCUCGCgcuaCAGCU-GCU- -5'
24164 3' -53.8 NC_005263.2 + 7015 0.7 0.536386
Target:  5'- cGGAUUGg-CG-GCGCGAaacgUGUCGACGAu -3'
miRNA:   3'- -CUUGACgaGCuCGCGCU----ACAGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 30799 0.71 0.493661
Target:  5'- -uGCUGCUCG-GCgGCGAcgUGcUCGGCGGa -3'
miRNA:   3'- cuUGACGAGCuCG-CGCU--AC-AGCUGCU- -5'
24164 3' -53.8 NC_005263.2 + 28635 0.71 0.451557
Target:  5'- -uACUGCUCGAGCGCcGUG-CGgaacgccGCGAg -3'
miRNA:   3'- cuUGACGAGCUCGCGcUACaGC-------UGCU- -5'
24164 3' -53.8 NC_005263.2 + 45000 0.73 0.367499
Target:  5'- aGAACUgGUUCG-GCGCGcUGUCGAaCGAg -3'
miRNA:   3'- -CUUGA-CGAGCuCGCGCuACAGCU-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.