miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24166 3' -60.7 NC_005263.2 + 22412 0.7 0.233617
Target:  5'- aCGCGCcGCCGUGcUCGcCG-UGUCCGGg -3'
miRNA:   3'- -GCGCGuCGGCGC-AGCcGCuACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 32752 0.7 0.237776
Target:  5'- uGCGCAguacgacguucagcGCCGCGUCGGgguucuCGGUGUCgGc -3'
miRNA:   3'- gCGCGU--------------CGGCGCAGCC------GCUACAGgCu -5'
24166 3' -60.7 NC_005263.2 + 32094 0.7 0.239577
Target:  5'- aCGUGCGGCgGCGUCGGUGcga-UCGAg -3'
miRNA:   3'- -GCGCGUCGgCGCAGCCGCuacaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 22216 0.7 0.239577
Target:  5'- aCGuCGCGGCCGuCGcCGGCGucgGcCCGGu -3'
miRNA:   3'- -GC-GCGUCGGC-GCaGCCGCua-CaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 26199 0.7 0.239577
Target:  5'- gCGCgGCGGCCGCGcgaugCGGCGGccGUUCGc -3'
miRNA:   3'- -GCG-CGUCGGCGCa----GCCGCUa-CAGGCu -5'
24166 3' -60.7 NC_005263.2 + 2698 0.7 0.251876
Target:  5'- gGCgGCGGCCGacagaccgaguuCGUCGGCGAgauUGUUCGu -3'
miRNA:   3'- gCG-CGUCGGC------------GCAGCCGCU---ACAGGCu -5'
24166 3' -60.7 NC_005263.2 + 12998 0.7 0.251876
Target:  5'- uGCGUuuaGGCCG-GUCGGCguGAUG-CCGAg -3'
miRNA:   3'- gCGCG---UCGGCgCAGCCG--CUACaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 23311 0.7 0.251876
Target:  5'- aCGCGCcGCCGaCGccCGGCGAgccgCCGAc -3'
miRNA:   3'- -GCGCGuCGGC-GCa-GCCGCUaca-GGCU- -5'
24166 3' -60.7 NC_005263.2 + 41549 0.69 0.258218
Target:  5'- aCGCGCGgcgcGCCGUGgCGGCGAUG--CGAg -3'
miRNA:   3'- -GCGCGU----CGGCGCaGCCGCUACagGCU- -5'
24166 3' -60.7 NC_005263.2 + 2695 0.69 0.258218
Target:  5'- uCGCGCGGCCGC-UCGGCaGGUG-Ca-- -3'
miRNA:   3'- -GCGCGUCGGCGcAGCCG-CUACaGgcu -5'
24166 3' -60.7 NC_005263.2 + 18559 0.69 0.26469
Target:  5'- uCGCGCAGCC-CGgcacCGGUGgcGUCCc- -3'
miRNA:   3'- -GCGCGUCGGcGCa---GCCGCuaCAGGcu -5'
24166 3' -60.7 NC_005263.2 + 10498 0.69 0.26469
Target:  5'- cCGCGaCGGCugauaaaccagCGCGUCGGCGAg--CUGAc -3'
miRNA:   3'- -GCGC-GUCG-----------GCGCAGCCGCUacaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 30935 0.69 0.26469
Target:  5'- aCGCGCgAGCUGCGcauucggcuucUCGGCcGUG-CCGAc -3'
miRNA:   3'- -GCGCG-UCGGCGC-----------AGCCGcUACaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 43052 0.69 0.271293
Target:  5'- gGCGCgacaauGGcCCGCGUUGGCGG-GUuuGAu -3'
miRNA:   3'- gCGCG------UC-GGCGCAGCCGCUaCAggCU- -5'
24166 3' -60.7 NC_005263.2 + 37608 0.69 0.278028
Target:  5'- aCGCGCugguuuaucAGCCGuCG-CGGuUGAUGUUCGAa -3'
miRNA:   3'- -GCGCG---------UCGGC-GCaGCC-GCUACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 46684 0.69 0.291896
Target:  5'- gCGCGCAGCCaaGgCGGCGcgcgCCGAc -3'
miRNA:   3'- -GCGCGUCGGcgCaGCCGCuacaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 36215 0.69 0.291896
Target:  5'- gCGCGCAggcgcccggcGCCGCGUCGucaGAuaUGUUCGAc -3'
miRNA:   3'- -GCGCGU----------CGGCGCAGCcg-CU--ACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 39724 0.68 0.299031
Target:  5'- gGCGCgGGCCGCGUCgaccuGGCGAgcgaaCUGAa -3'
miRNA:   3'- gCGCG-UCGGCGCAG-----CCGCUaca--GGCU- -5'
24166 3' -60.7 NC_005263.2 + 13567 0.68 0.306299
Target:  5'- gGCGCGGCaCGag-CGGCG-UGUCCa- -3'
miRNA:   3'- gCGCGUCG-GCgcaGCCGCuACAGGcu -5'
24166 3' -60.7 NC_005263.2 + 3559 0.68 0.306299
Target:  5'- cCGCGCAG-CGCGUCGGcCGAccacaucGUUCGc -3'
miRNA:   3'- -GCGCGUCgGCGCAGCC-GCUa------CAGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.