miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24166 3' -60.7 NC_005263.2 + 27136 1.08 0.000344
Target:  5'- gCGCGCAGCCGCGUCGGCGAUGUCCGAc -3'
miRNA:   3'- -GCGCGUCGGCGCAGCCGCUACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 16362 0.78 0.066071
Target:  5'- gCGCGCGGCCGCGucgcUCGGCGGcgGcCUGAu -3'
miRNA:   3'- -GCGCGUCGGCGC----AGCCGCUa-CaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 10259 0.77 0.081179
Target:  5'- gGCGCAcgcgguucgcgaaacGCCGCGUCGGCGAcaUGagcgCCGGa -3'
miRNA:   3'- gCGCGU---------------CGGCGCAGCCGCU--ACa---GGCU- -5'
24166 3' -60.7 NC_005263.2 + 39994 0.76 0.084855
Target:  5'- uGgGCcuGCCGcCGaCGGCGAUGUCCGAu -3'
miRNA:   3'- gCgCGu-CGGC-GCaGCCGCUACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 30720 0.76 0.094752
Target:  5'- gCGCGCGGCCGCGcCGGCagacagcuucacGcgGUUCGGa -3'
miRNA:   3'- -GCGCGUCGGCGCaGCCG------------CuaCAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 10389 0.74 0.117905
Target:  5'- aCGCGCcgGGCCG-GcCGGCGAgcggGUCCGGc -3'
miRNA:   3'- -GCGCG--UCGGCgCaGCCGCUa---CAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 17397 0.74 0.121146
Target:  5'- gGCGCGGCCGCGcgccuggCgGGCGGUGUCg-- -3'
miRNA:   3'- gCGCGUCGGCGCa------G-CCGCUACAGgcu -5'
24166 3' -60.7 NC_005263.2 + 29048 0.74 0.127877
Target:  5'- gCGCGCAgGCCGCG-CGGCGc-GUCCu- -3'
miRNA:   3'- -GCGCGU-CGGCGCaGCCGCuaCAGGcu -5'
24166 3' -60.7 NC_005263.2 + 14147 0.73 0.142387
Target:  5'- aGCGCGGCCGCcUUGGCGAcuucgGgCCGGc -3'
miRNA:   3'- gCGCGUCGGCGcAGCCGCUa----CaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 3312 0.72 0.158388
Target:  5'- gGCGCGGCCGCG-CGGUGuucaacGUCUGc -3'
miRNA:   3'- gCGCGUCGGCGCaGCCGCua----CAGGCu -5'
24166 3' -60.7 NC_005263.2 + 8286 0.72 0.166985
Target:  5'- aGCGCgAGCgGCGUCGGUcgGAUcGUCCa- -3'
miRNA:   3'- gCGCG-UCGgCGCAGCCG--CUA-CAGGcu -5'
24166 3' -60.7 NC_005263.2 + 40918 0.72 0.173249
Target:  5'- gGCGCAGCCGCacauacccggguaucGcagCGGCGAUGgCCGc -3'
miRNA:   3'- gCGCGUCGGCG---------------Ca--GCCGCUACaGGCu -5'
24166 3' -60.7 NC_005263.2 + 37419 0.72 0.179252
Target:  5'- uCGCGCGGCCGUccucgucgucauacGUCGGCGcgcgcgGUCUGc -3'
miRNA:   3'- -GCGCGUCGGCG--------------CAGCCGCua----CAGGCu -5'
24166 3' -60.7 NC_005263.2 + 31618 0.72 0.180192
Target:  5'- uCGCGaCGGCCGCG-CGGCGcagcgccgucucgGUGUUCGu -3'
miRNA:   3'- -GCGC-GUCGGCGCaGCCGC-------------UACAGGCu -5'
24166 3' -60.7 NC_005263.2 + 17808 0.72 0.180663
Target:  5'- aCGC-CGGCCGCGccCGGCGcUGUCgCGGa -3'
miRNA:   3'- -GCGcGUCGGCGCa-GCCGCuACAG-GCU- -5'
24166 3' -60.7 NC_005263.2 + 28077 0.71 0.185439
Target:  5'- aCGCGCGGCacgaucccgUGUGUUGGCGcgG-CCGAu -3'
miRNA:   3'- -GCGCGUCG---------GCGCAGCCGCuaCaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 28933 0.71 0.189832
Target:  5'- aCGCGCggccacgAGCCGCGcCGGCGGaugcacgGUCaCGAc -3'
miRNA:   3'- -GCGCG-------UCGGCGCaGCCGCUa------CAG-GCU- -5'
24166 3' -60.7 NC_005263.2 + 6851 0.71 0.20044
Target:  5'- uGCGCGGCCaucgaGCGgauugCGGCGAcggcauUGUCCa- -3'
miRNA:   3'- gCGCGUCGG-----CGCa----GCCGCU------ACAGGcu -5'
24166 3' -60.7 NC_005263.2 + 8407 0.71 0.214284
Target:  5'- aGCGC-GCCGCcUCGGCGAccgugaaguucgcGUCCGGc -3'
miRNA:   3'- gCGCGuCGGCGcAGCCGCUa------------CAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 30355 0.71 0.216485
Target:  5'- aGCGCGGCCGCGcugccgcCGGCGccgaGUgCGAg -3'
miRNA:   3'- gCGCGUCGGCGCa------GCCGCua--CAgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.