miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24166 3' -60.7 NC_005263.2 + 2695 0.69 0.258218
Target:  5'- uCGCGCGGCCGC-UCGGCaGGUG-Ca-- -3'
miRNA:   3'- -GCGCGUCGGCGcAGCCG-CUACaGgcu -5'
24166 3' -60.7 NC_005263.2 + 2698 0.7 0.251876
Target:  5'- gGCgGCGGCCGacagaccgaguuCGUCGGCGAgauUGUUCGu -3'
miRNA:   3'- gCG-CGUCGGC------------GCAGCCGCU---ACAGGCu -5'
24166 3' -60.7 NC_005263.2 + 2880 0.66 0.395086
Target:  5'- aCGuCGCAGCgGCGa-GGCuGAUGUuggCCGAg -3'
miRNA:   3'- -GC-GCGUCGgCGCagCCG-CUACA---GGCU- -5'
24166 3' -60.7 NC_005263.2 + 3312 0.72 0.158388
Target:  5'- gGCGCGGCCGCG-CGGUGuucaacGUCUGc -3'
miRNA:   3'- gCGCGUCGGCGCaGCCGCua----CAGGCu -5'
24166 3' -60.7 NC_005263.2 + 3559 0.68 0.306299
Target:  5'- cCGCGCAG-CGCGUCGGcCGAccacaucGUUCGc -3'
miRNA:   3'- -GCGCGUCgGCGCAGCC-GCUa------CAGGCu -5'
24166 3' -60.7 NC_005263.2 + 6851 0.71 0.20044
Target:  5'- uGCGCGGCCaucgaGCGgauugCGGCGAcggcauUGUCCa- -3'
miRNA:   3'- gCGCGUCGG-----CGCa----GCCGCU------ACAGGcu -5'
24166 3' -60.7 NC_005263.2 + 8286 0.72 0.166985
Target:  5'- aGCGCgAGCgGCGUCGGUcgGAUcGUCCa- -3'
miRNA:   3'- gCGCG-UCGgCGCAGCCG--CUA-CAGGcu -5'
24166 3' -60.7 NC_005263.2 + 8407 0.71 0.214284
Target:  5'- aGCGC-GCCGCcUCGGCGAccgugaaguucgcGUCCGGc -3'
miRNA:   3'- gCGCGuCGGCGcAGCCGCUa------------CAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 9208 0.67 0.352737
Target:  5'- aCGgGCGGCgCuCGUaCGGCGcgcgguacGUGUCCGAc -3'
miRNA:   3'- -GCgCGUCG-GcGCA-GCCGC--------UACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 9526 0.67 0.360945
Target:  5'- uCGUGCGGCCGUGcgCGGCagcGaCCGAc -3'
miRNA:   3'- -GCGCGUCGGCGCa-GCCGcuaCaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 10259 0.77 0.081179
Target:  5'- gGCGCAcgcgguucgcgaaacGCCGCGUCGGCGAcaUGagcgCCGGa -3'
miRNA:   3'- gCGCGU---------------CGGCGCAGCCGCU--ACa---GGCU- -5'
24166 3' -60.7 NC_005263.2 + 10389 0.74 0.117905
Target:  5'- aCGCGCcgGGCCG-GcCGGCGAgcggGUCCGGc -3'
miRNA:   3'- -GCGCG--UCGGCgCaGCCGCUa---CAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 10498 0.69 0.26469
Target:  5'- cCGCGaCGGCugauaaaccagCGCGUCGGCGAg--CUGAc -3'
miRNA:   3'- -GCGC-GUCG-----------GCGCAGCCGCUacaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 12179 0.67 0.369285
Target:  5'- -uCGCGGCCGUGUCG-CGAUGaagCgGAu -3'
miRNA:   3'- gcGCGUCGGCGCAGCcGCUACa--GgCU- -5'
24166 3' -60.7 NC_005263.2 + 12579 0.66 0.431246
Target:  5'- cCGCGC-GCCGCcgggcgcaGUCGGCGcgccaGUGUCa-- -3'
miRNA:   3'- -GCGCGuCGGCG--------CAGCCGC-----UACAGgcu -5'
24166 3' -60.7 NC_005263.2 + 12998 0.7 0.251876
Target:  5'- uGCGUuuaGGCCG-GUCGGCguGAUG-CCGAg -3'
miRNA:   3'- gCGCG---UCGGCgCAGCCG--CUACaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 13567 0.68 0.306299
Target:  5'- gGCGCGGCaCGag-CGGCG-UGUCCa- -3'
miRNA:   3'- gCGCGUCG-GCgcaGCCGCuACAGGcu -5'
24166 3' -60.7 NC_005263.2 + 14014 0.67 0.369285
Target:  5'- aCGCGCgaGGCgcaGCGaCGGCGAcgGUUCGGc -3'
miRNA:   3'- -GCGCG--UCGg--CGCaGCCGCUa-CAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 14072 0.67 0.377756
Target:  5'- aGCGC-GCCGCGcCGGCccAUGUCgGc -3'
miRNA:   3'- gCGCGuCGGCGCaGCCGc-UACAGgCu -5'
24166 3' -60.7 NC_005263.2 + 14147 0.73 0.142387
Target:  5'- aGCGCGGCCGCcUUGGCGAcuucgGgCCGGc -3'
miRNA:   3'- gCGCGUCGGCGcAGCCGCUa----CaGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.