miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24166 3' -60.7 NC_005263.2 + 10259 0.77 0.081179
Target:  5'- gGCGCAcgcgguucgcgaaacGCCGCGUCGGCGAcaUGagcgCCGGa -3'
miRNA:   3'- gCGCGU---------------CGGCGCAGCCGCU--ACa---GGCU- -5'
24166 3' -60.7 NC_005263.2 + 13567 0.68 0.306299
Target:  5'- gGCGCGGCaCGag-CGGCG-UGUCCa- -3'
miRNA:   3'- gCGCGUCG-GCgcaGCCGCuACAGGcu -5'
24166 3' -60.7 NC_005263.2 + 44805 0.68 0.33202
Target:  5'- cCGCGCGGCCGCGcccaggcaagaaaaCGGCGGacUgCGAg -3'
miRNA:   3'- -GCGCGUCGGCGCa-------------GCCGCUacAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 15592 0.66 0.437771
Target:  5'- aGCGCGGCCGgugcacgagcgauaCGaacgCGGCGAaGUUCGu -3'
miRNA:   3'- gCGCGUCGGC--------------GCa---GCCGCUaCAGGCu -5'
24166 3' -60.7 NC_005263.2 + 37419 0.72 0.179252
Target:  5'- uCGCGCGGCCGUccucgucgucauacGUCGGCGcgcgcgGUCUGc -3'
miRNA:   3'- -GCGCGUCGGCG--------------CAGCCGCua----CAGGCu -5'
24166 3' -60.7 NC_005263.2 + 31618 0.72 0.180192
Target:  5'- uCGCGaCGGCCGCG-CGGCGcagcgccgucucgGUGUUCGu -3'
miRNA:   3'- -GCGC-GUCGGCGCaGCCGC-------------UACAGGCu -5'
24166 3' -60.7 NC_005263.2 + 6851 0.71 0.20044
Target:  5'- uGCGCGGCCaucgaGCGgauugCGGCGAcggcauUGUCCa- -3'
miRNA:   3'- gCGCGUCGG-----CGCa----GCCGCU------ACAGGcu -5'
24166 3' -60.7 NC_005263.2 + 30355 0.71 0.216485
Target:  5'- aGCGCGGCCGCGcugccgcCGGCGccgaGUgCGAg -3'
miRNA:   3'- gCGCGUCGGCGCa------GCCGCua--CAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 12998 0.7 0.251876
Target:  5'- uGCGUuuaGGCCG-GUCGGCguGAUG-CCGAg -3'
miRNA:   3'- gCGCG---UCGGCgCAGCCG--CUACaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 46684 0.69 0.291896
Target:  5'- gCGCGCAGCCaaGgCGGCGcgcgCCGAc -3'
miRNA:   3'- -GCGCGUCGGcgCaGCCGCuacaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 18559 0.69 0.26469
Target:  5'- uCGCGCAGCC-CGgcacCGGUGgcGUCCc- -3'
miRNA:   3'- -GCGCGUCGGcGCa---GCCGCuaCAGGcu -5'
24166 3' -60.7 NC_005263.2 + 2698 0.7 0.251876
Target:  5'- gGCgGCGGCCGacagaccgaguuCGUCGGCGAgauUGUUCGu -3'
miRNA:   3'- gCG-CGUCGGC------------GCAGCCGCU---ACAGGCu -5'
24166 3' -60.7 NC_005263.2 + 30720 0.76 0.094752
Target:  5'- gCGCGCGGCCGCGcCGGCagacagcuucacGcgGUUCGGa -3'
miRNA:   3'- -GCGCGUCGGCGCaGCCG------------CuaCAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 43052 0.69 0.271293
Target:  5'- gGCGCgacaauGGcCCGCGUUGGCGG-GUuuGAu -3'
miRNA:   3'- gCGCG------UC-GGCGCAGCCGCUaCAggCU- -5'
24166 3' -60.7 NC_005263.2 + 29048 0.74 0.127877
Target:  5'- gCGCGCAgGCCGCG-CGGCGc-GUCCu- -3'
miRNA:   3'- -GCGCGU-CGGCGCaGCCGCuaCAGGcu -5'
24166 3' -60.7 NC_005263.2 + 32752 0.7 0.237776
Target:  5'- uGCGCAguacgacguucagcGCCGCGUCGGgguucuCGGUGUCgGc -3'
miRNA:   3'- gCGCGU--------------CGGCGCAGCC------GCUACAGgCu -5'
24166 3' -60.7 NC_005263.2 + 37608 0.69 0.278028
Target:  5'- aCGCGCugguuuaucAGCCGuCG-CGGuUGAUGUUCGAa -3'
miRNA:   3'- -GCGCG---------UCGGC-GCaGCC-GCUACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 3559 0.68 0.306299
Target:  5'- cCGCGCAG-CGCGUCGGcCGAccacaucGUUCGc -3'
miRNA:   3'- -GCGCGUCgGCGCAGCC-GCUa------CAGGCu -5'
24166 3' -60.7 NC_005263.2 + 14147 0.73 0.142387
Target:  5'- aGCGCGGCCGCcUUGGCGAcuucgGgCCGGc -3'
miRNA:   3'- gCGCGUCGGCGcAGCCGCUa----CaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 17808 0.72 0.180663
Target:  5'- aCGC-CGGCCGCGccCGGCGcUGUCgCGGa -3'
miRNA:   3'- -GCGcGUCGGCGCa-GCCGCuACAG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.