miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24166 3' -60.7 NC_005263.2 + 43052 0.69 0.271293
Target:  5'- gGCGCgacaauGGcCCGCGUUGGCGG-GUuuGAu -3'
miRNA:   3'- gCGCG------UC-GGCGCAGCCGCUaCAggCU- -5'
24166 3' -60.7 NC_005263.2 + 6851 0.71 0.20044
Target:  5'- uGCGCGGCCaucgaGCGgauugCGGCGAcggcauUGUCCa- -3'
miRNA:   3'- gCGCGUCGG-----CGCa----GCCGCU------ACAGGcu -5'
24166 3' -60.7 NC_005263.2 + 44669 0.67 0.377756
Target:  5'- uCGCGCGcGCCGaagaaGUCGGCGGccaUCCu- -3'
miRNA:   3'- -GCGCGU-CGGCg----CAGCCGCUac-AGGcu -5'
24166 3' -60.7 NC_005263.2 + 44805 0.68 0.33202
Target:  5'- cCGCGCGGCCGCGcccaggcaagaaaaCGGCGGacUgCGAg -3'
miRNA:   3'- -GCGCGUCGGCGCa-------------GCCGCUacAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 17808 0.72 0.180663
Target:  5'- aCGC-CGGCCGCGccCGGCGcUGUCgCGGa -3'
miRNA:   3'- -GCGcGUCGGCGCa-GCCGCuACAG-GCU- -5'
24166 3' -60.7 NC_005263.2 + 33160 0.67 0.377756
Target:  5'- aGCGCGGCgccuugcauCGCGaCGGgGAUGU-CGAg -3'
miRNA:   3'- gCGCGUCG---------GCGCaGCCgCUACAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 31618 0.72 0.180192
Target:  5'- uCGCGaCGGCCGCG-CGGCGcagcgccgucucgGUGUUCGu -3'
miRNA:   3'- -GCGC-GUCGGCGCaGCCGC-------------UACAGGCu -5'
24166 3' -60.7 NC_005263.2 + 37419 0.72 0.179252
Target:  5'- uCGCGCGGCCGUccucgucgucauacGUCGGCGcgcgcgGUCUGc -3'
miRNA:   3'- -GCGCGUCGGCG--------------CAGCCGCua----CAGGCu -5'
24166 3' -60.7 NC_005263.2 + 9526 0.67 0.360945
Target:  5'- uCGUGCGGCCGUGcgCGGCagcGaCCGAc -3'
miRNA:   3'- -GCGCGUCGGCGCa-GCCGcuaCaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 24026 0.66 0.395086
Target:  5'- cCGC-CGGCCGgaUCGGuCGAcgUGUCCGGg -3'
miRNA:   3'- -GCGcGUCGGCgcAGCC-GCU--ACAGGCU- -5'
24166 3' -60.7 NC_005263.2 + 12998 0.7 0.251876
Target:  5'- uGCGUuuaGGCCG-GUCGGCguGAUG-CCGAg -3'
miRNA:   3'- gCGCG---UCGGCgCAGCCG--CUACaGGCU- -5'
24166 3' -60.7 NC_005263.2 + 30355 0.71 0.216485
Target:  5'- aGCGCGGCCGCGcugccgcCGGCGccgaGUgCGAg -3'
miRNA:   3'- gCGCGUCGGCGCa------GCCGCua--CAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 12179 0.67 0.369285
Target:  5'- -uCGCGGCCGUGUCG-CGAUGaagCgGAu -3'
miRNA:   3'- gcGCGUCGGCGCAGCcGCUACa--GgCU- -5'
24166 3' -60.7 NC_005263.2 + 34569 0.67 0.385491
Target:  5'- gGCGCAGCCacggucaGCGUCGcuugauuacucGCGGacgUGUCgGAg -3'
miRNA:   3'- gCGCGUCGG-------CGCAGC-----------CGCU---ACAGgCU- -5'
24166 3' -60.7 NC_005263.2 + 18906 0.68 0.321241
Target:  5'- aCGCGcCGGCCuGCGUCGaGCG-UGaCCGc -3'
miRNA:   3'- -GCGC-GUCGG-CGCAGC-CGCuACaGGCu -5'
24166 3' -60.7 NC_005263.2 + 38564 0.68 0.321241
Target:  5'- cCGCGagcGCCGCGUCGGuCGcUG-CCGc -3'
miRNA:   3'- -GCGCgu-CGGCGCAGCC-GCuACaGGCu -5'
24166 3' -60.7 NC_005263.2 + 40918 0.72 0.173249
Target:  5'- gGCGCAGCCGCacauacccggguaucGcagCGGCGAUGgCCGc -3'
miRNA:   3'- gCGCGUCGGCG---------------Ca--GCCGCUACaGGCu -5'
24166 3' -60.7 NC_005263.2 + 40522 0.67 0.352737
Target:  5'- gCGCGUGGcCCGCaUUacaagGGCGAUGUgCGAg -3'
miRNA:   3'- -GCGCGUC-GGCGcAG-----CCGCUACAgGCU- -5'
24166 3' -60.7 NC_005263.2 + 28933 0.71 0.189832
Target:  5'- aCGCGCggccacgAGCCGCGcCGGCGGaugcacgGUCaCGAc -3'
miRNA:   3'- -GCGCG-------UCGGCGCaGCCGCUa------CAG-GCU- -5'
24166 3' -60.7 NC_005263.2 + 28077 0.71 0.185439
Target:  5'- aCGCGCGGCacgaucccgUGUGUUGGCGcgG-CCGAu -3'
miRNA:   3'- -GCGCGUCG---------GCGCAGCCGCuaCaGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.