miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24166 5' -54.4 NC_005263.2 + 27171 1.1 0.001038
Target:  5'- gCGCCGUCAUCACCGCAUUCGUCUGCGa -3'
miRNA:   3'- -GCGGCAGUAGUGGCGUAAGCAGACGC- -5'
24166 5' -54.4 NC_005263.2 + 22775 0.74 0.304489
Target:  5'- aGCgaUCGUCGCCGCGUUUGUgaGCGg -3'
miRNA:   3'- gCGgcAGUAGUGGCGUAAGCAgaCGC- -5'
24166 5' -54.4 NC_005263.2 + 5253 0.74 0.318451
Target:  5'- gCGCCGUCAUCagcgggcgguGCCggcagcgGCAUccaguggguuacgUCGUCUGCGg -3'
miRNA:   3'- -GCGGCAGUAG----------UGG-------CGUA-------------AGCAGACGC- -5'
24166 5' -54.4 NC_005263.2 + 9319 0.73 0.328023
Target:  5'- uGCCGcUCGUgGCCGCuuccaUCGUCaUGCGg -3'
miRNA:   3'- gCGGC-AGUAgUGGCGua---AGCAG-ACGC- -5'
24166 5' -54.4 NC_005263.2 + 1605 0.73 0.350333
Target:  5'- uCGCCGUUuUCgACCGCAUccgggucgaacgcgUCGUCgGCGg -3'
miRNA:   3'- -GCGGCAGuAG-UGGCGUA--------------AGCAGaCGC- -5'
24166 5' -54.4 NC_005263.2 + 18828 0.73 0.361452
Target:  5'- cCGCCGugcagcUCAUUGCCGCGUUCGaCcGCGu -3'
miRNA:   3'- -GCGGC------AGUAGUGGCGUAAGCaGaCGC- -5'
24166 5' -54.4 NC_005263.2 + 15579 0.72 0.40646
Target:  5'- uGCCGacaGUCGCCGCGUUCGaCgUGCu -3'
miRNA:   3'- gCGGCag-UAGUGGCGUAAGCaG-ACGc -5'
24166 5' -54.4 NC_005263.2 + 10348 0.71 0.454827
Target:  5'- aGCCGUCAUC-CgGCcgUCGUaugcCUGCc -3'
miRNA:   3'- gCGGCAGUAGuGgCGuaAGCA----GACGc -5'
24166 5' -54.4 NC_005263.2 + 43570 0.7 0.485297
Target:  5'- cCGCCGUCGgcacagCGCCGCA--CGUCgGUa -3'
miRNA:   3'- -GCGGCAGUa-----GUGGCGUaaGCAGaCGc -5'
24166 5' -54.4 NC_005263.2 + 26480 0.7 0.527358
Target:  5'- aCGCCGcgCGUCGCCGCA-----CUGCGc -3'
miRNA:   3'- -GCGGCa-GUAGUGGCGUaagcaGACGC- -5'
24166 5' -54.4 NC_005263.2 + 5420 0.69 0.538091
Target:  5'- aCGCCcugcgaucagCAUCACCGUAUcCGUCgGCGc -3'
miRNA:   3'- -GCGGca--------GUAGUGGCGUAaGCAGaCGC- -5'
24166 5' -54.4 NC_005263.2 + 45541 0.69 0.538091
Target:  5'- gGCCGUgAUUGCCGa--UCGUCUcGCGu -3'
miRNA:   3'- gCGGCAgUAGUGGCguaAGCAGA-CGC- -5'
24166 5' -54.4 NC_005263.2 + 45729 0.69 0.548899
Target:  5'- gCGCCGUCAUggguuaCGCCGCGUcgaucaacuUCcagCUGCGc -3'
miRNA:   3'- -GCGGCAGUA------GUGGCGUA---------AGca-GACGC- -5'
24166 5' -54.4 NC_005263.2 + 32540 0.69 0.548899
Target:  5'- -aCCGUCAuucggcguUCAgCGCGcgCGUCUGCGc -3'
miRNA:   3'- gcGGCAGU--------AGUgGCGUaaGCAGACGC- -5'
24166 5' -54.4 NC_005263.2 + 6559 0.69 0.548899
Target:  5'- uCGCCGcCAcggcgCGCCGCg--CGUUUGCGc -3'
miRNA:   3'- -GCGGCaGUa----GUGGCGuaaGCAGACGC- -5'
24166 5' -54.4 NC_005263.2 + 27807 0.68 0.592717
Target:  5'- uCGCCGUCGUgAUCGCgg-CGUCaccuucGCGg -3'
miRNA:   3'- -GCGGCAGUAgUGGCGuaaGCAGa-----CGC- -5'
24166 5' -54.4 NC_005263.2 + 36101 0.68 0.603777
Target:  5'- gCGCCGUCGcguugaUgGCCGCGU-CGUacUUGCGc -3'
miRNA:   3'- -GCGGCAGU------AgUGGCGUAaGCA--GACGC- -5'
24166 5' -54.4 NC_005263.2 + 20659 0.68 0.625964
Target:  5'- gCGCCGcUCGUCGCgGCcgUCGaaagcguguUCgGCGg -3'
miRNA:   3'- -GCGGC-AGUAGUGgCGuaAGC---------AGaCGC- -5'
24166 5' -54.4 NC_005263.2 + 20321 0.68 0.625964
Target:  5'- cCGCCGUCccgacgAUCACCGC---UGUCgGCa -3'
miRNA:   3'- -GCGGCAG------UAGUGGCGuaaGCAGaCGc -5'
24166 5' -54.4 NC_005263.2 + 20191 0.67 0.67032
Target:  5'- gCGCCGggCGacgCGCCGCcgUCGagUGCu -3'
miRNA:   3'- -GCGGCa-GUa--GUGGCGuaAGCagACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.