miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24166 5' -54.4 NC_005263.2 + 268 0.66 0.760678
Target:  5'- gGUCGUCAcgccaccgagcacggUCACgGUcgaCGUCUGCGg -3'
miRNA:   3'- gCGGCAGU---------------AGUGgCGuaaGCAGACGC- -5'
24166 5' -54.4 NC_005263.2 + 1416 0.66 0.735523
Target:  5'- uGUCGUCGgcgcgCGCCGCcUUgG-CUGCGc -3'
miRNA:   3'- gCGGCAGUa----GUGGCGuAAgCaGACGC- -5'
24166 5' -54.4 NC_005263.2 + 1605 0.73 0.350333
Target:  5'- uCGCCGUUuUCgACCGCAUccgggucgaacgcgUCGUCgGCGg -3'
miRNA:   3'- -GCGGCAGuAG-UGGCGUA--------------AGCAGaCGC- -5'
24166 5' -54.4 NC_005263.2 + 1903 0.66 0.714087
Target:  5'- uGCCGaUCAggaaguaccaGCCGCg--CGUCUGCa -3'
miRNA:   3'- gCGGC-AGUag--------UGGCGuaaGCAGACGc -5'
24166 5' -54.4 NC_005263.2 + 3395 0.67 0.681345
Target:  5'- uCGCCGUCGUUGCgGgCAcUUCGguaaagaacugCUGCGg -3'
miRNA:   3'- -GCGGCAGUAGUGgC-GU-AAGCa----------GACGC- -5'
24166 5' -54.4 NC_005263.2 + 4915 0.66 0.736584
Target:  5'- gCGCCGUCGccauccaaaacaucgCGCCGUAcugCGUCUGg- -3'
miRNA:   3'- -GCGGCAGUa--------------GUGGCGUaa-GCAGACgc -5'
24166 5' -54.4 NC_005263.2 + 5253 0.74 0.318451
Target:  5'- gCGCCGUCAUCagcgggcgguGCCggcagcgGCAUccaguggguuacgUCGUCUGCGg -3'
miRNA:   3'- -GCGGCAGUAG----------UGG-------CGUA-------------AGCAGACGC- -5'
24166 5' -54.4 NC_005263.2 + 5420 0.69 0.538091
Target:  5'- aCGCCcugcgaucagCAUCACCGUAUcCGUCgGCGc -3'
miRNA:   3'- -GCGGca--------GUAGUGGCGUAaGCAGaCGC- -5'
24166 5' -54.4 NC_005263.2 + 6559 0.69 0.548899
Target:  5'- uCGCCGcCAcggcgCGCCGCg--CGUUUGCGc -3'
miRNA:   3'- -GCGGCaGUa----GUGGCGuaaGCAGACGC- -5'
24166 5' -54.4 NC_005263.2 + 9319 0.73 0.328023
Target:  5'- uGCCGcUCGUgGCCGCuuccaUCGUCaUGCGg -3'
miRNA:   3'- gCGGC-AGUAgUGGCGua---AGCAG-ACGC- -5'
24166 5' -54.4 NC_005263.2 + 10348 0.71 0.454827
Target:  5'- aGCCGUCAUC-CgGCcgUCGUaugcCUGCc -3'
miRNA:   3'- gCGGCAGUAGuGgCGuaAGCA----GACGc -5'
24166 5' -54.4 NC_005263.2 + 12604 0.66 0.724852
Target:  5'- gCGCCaGU-GUCACCGCcUUCGgccaUGCGc -3'
miRNA:   3'- -GCGG-CAgUAGUGGCGuAAGCag--ACGC- -5'
24166 5' -54.4 NC_005263.2 + 12649 0.66 0.724852
Target:  5'- aCGCCGUCGaUAUCGUcgUCGgccgGCGc -3'
miRNA:   3'- -GCGGCAGUaGUGGCGuaAGCaga-CGC- -5'
24166 5' -54.4 NC_005263.2 + 15579 0.72 0.40646
Target:  5'- uGCCGacaGUCGCCGCGUUCGaCgUGCu -3'
miRNA:   3'- gCGGCag-UAGUGGCGUAAGCaG-ACGc -5'
24166 5' -54.4 NC_005263.2 + 18600 0.66 0.735523
Target:  5'- gCGCCGaCGgaCGCCGCAgcggCGUUcGCGg -3'
miRNA:   3'- -GCGGCaGUa-GUGGCGUaa--GCAGaCGC- -5'
24166 5' -54.4 NC_005263.2 + 18828 0.73 0.361452
Target:  5'- cCGCCGugcagcUCAUUGCCGCGUUCGaCcGCGu -3'
miRNA:   3'- -GCGGC------AGUAGUGGCGUAAGCaGaCGC- -5'
24166 5' -54.4 NC_005263.2 + 20191 0.67 0.67032
Target:  5'- gCGCCGggCGacgCGCCGCcgUCGagUGCu -3'
miRNA:   3'- -GCGGCa-GUa--GUGGCGuaAGCagACGc -5'
24166 5' -54.4 NC_005263.2 + 20321 0.68 0.625964
Target:  5'- cCGCCGUCccgacgAUCACCGC---UGUCgGCa -3'
miRNA:   3'- -GCGGCAG------UAGUGGCGuaaGCAGaCGc -5'
24166 5' -54.4 NC_005263.2 + 20659 0.68 0.625964
Target:  5'- gCGCCGcUCGUCGCgGCcgUCGaaagcguguUCgGCGg -3'
miRNA:   3'- -GCGGC-AGUAGUGgCGuaAGC---------AGaCGC- -5'
24166 5' -54.4 NC_005263.2 + 20962 0.66 0.756535
Target:  5'- gCGCUGUCGgacaUCGCCGacg-CGgCUGCGc -3'
miRNA:   3'- -GCGGCAGU----AGUGGCguaaGCaGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.