miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 3' -57.8 NC_005263.2 + 13153 0.68 0.375244
Target:  5'- -aUC-GCCUAUAUGGCUGcCGGCAcgGCa -3'
miRNA:   3'- uaAGcCGGAUAUGCCGGCcGCCGU--UG- -5'
24169 3' -57.8 NC_005263.2 + 23553 0.68 0.375244
Target:  5'- -gUCgGGCCUGUucccGCaGCCGGCaGGCAc- -3'
miRNA:   3'- uaAG-CCGGAUA----UGcCGGCCG-CCGUug -5'
24169 3' -57.8 NC_005263.2 + 2645 0.68 0.366461
Target:  5'- -aUCGcGCUUGc-CGGCguauCGGCGGCGACa -3'
miRNA:   3'- uaAGC-CGGAUauGCCG----GCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 27537 0.68 0.366461
Target:  5'- -gUCGGC----ACGGCCGGCaGGCcgGGCa -3'
miRNA:   3'- uaAGCCGgauaUGCCGGCCG-CCG--UUG- -5'
24169 3' -57.8 NC_005263.2 + 5847 0.68 0.363854
Target:  5'- -gUCGGCCgucGUGCGGUCgaagucgagccgcaGGCGGUAc- -3'
miRNA:   3'- uaAGCCGGa--UAUGCCGG--------------CCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 12545 0.69 0.357821
Target:  5'- cGUUC-GCg---GCGGCCGGCGGCGc- -3'
miRNA:   3'- -UAAGcCGgauaUGCCGGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 45413 0.69 0.357821
Target:  5'- -cUCGGUCUGUcggccGCcGCCGGC-GCGACa -3'
miRNA:   3'- uaAGCCGGAUA-----UGcCGGCCGcCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 24991 0.69 0.357821
Target:  5'- --cCGGCCUggccgcaaccggGUAUGGCUgcgguGGCGGUGGCu -3'
miRNA:   3'- uaaGCCGGA------------UAUGCCGG-----CCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 17742 0.69 0.357821
Target:  5'- -cUC-GCaCUcgGC-GCCGGCGGCAGCg -3'
miRNA:   3'- uaAGcCG-GAuaUGcCGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 15678 0.69 0.357821
Target:  5'- -cUUGGCgUGccaagaGCGGCCGGCGagcucGCAGCg -3'
miRNA:   3'- uaAGCCGgAUa-----UGCCGGCCGC-----CGUUG- -5'
24169 3' -57.8 NC_005263.2 + 42014 0.69 0.340973
Target:  5'- --cCGGCa-GUGCGGCCGGCcGCGc- -3'
miRNA:   3'- uaaGCCGgaUAUGCCGGCCGcCGUug -5'
24169 3' -57.8 NC_005263.2 + 11958 0.69 0.338495
Target:  5'- ---aGGCCgucgccaaccucacUAUACGGCaGGCGcGCAGCg -3'
miRNA:   3'- uaagCCGG--------------AUAUGCCGgCCGC-CGUUG- -5'
24169 3' -57.8 NC_005263.2 + 14889 0.69 0.324706
Target:  5'- -gUCGGCCgagugcagGUGCGGCaCGagugcgccaaGCGGCAAg -3'
miRNA:   3'- uaAGCCGGa-------UAUGCCG-GC----------CGCCGUUg -5'
24169 3' -57.8 NC_005263.2 + 8879 0.69 0.324706
Target:  5'- --gCGGCCcGUGCuGCCGGU-GCAGCg -3'
miRNA:   3'- uaaGCCGGaUAUGcCGGCCGcCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 16767 0.69 0.316791
Target:  5'- -gUCGcGCCUG-ACGGCCGcCGGCGu- -3'
miRNA:   3'- uaAGC-CGGAUaUGCCGGCcGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 2678 0.69 0.316791
Target:  5'- --gCaGCCUgcaGUGuCGcGCCGGCGGCGGCc -3'
miRNA:   3'- uaaGcCGGA---UAU-GC-CGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 18618 0.7 0.309023
Target:  5'- --gCGGCgUucGCGGCaGGUGGCAACc -3'
miRNA:   3'- uaaGCCGgAuaUGCCGgCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 10570 0.7 0.309023
Target:  5'- --gUGGCCg---UGGCCGGCGGCc-- -3'
miRNA:   3'- uaaGCCGGauauGCCGGCCGCCGuug -5'
24169 3' -57.8 NC_005263.2 + 42236 0.7 0.286594
Target:  5'- cUUCGGCCcGUACcGCCuGCGGCucGACu -3'
miRNA:   3'- uAAGCCGGaUAUGcCGGcCGCCG--UUG- -5'
24169 3' -57.8 NC_005263.2 + 26523 0.7 0.279408
Target:  5'- --gCGGCgUcgAC-GCCGGCGGCGAg -3'
miRNA:   3'- uaaGCCGgAuaUGcCGGCCGCCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.