miRNA display CGI


Results 21 - 40 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 3' -57.8 NC_005263.2 + 14166 0.71 0.252096
Target:  5'- cUUCgGGCCg--GCGGCCGGUGuGCGc- -3'
miRNA:   3'- uAAG-CCGGauaUGCCGGCCGC-CGUug -5'
24169 3' -57.8 NC_005263.2 + 14258 0.75 0.139047
Target:  5'- --cUGGCUUGcgGCGGCCGGC-GCAACg -3'
miRNA:   3'- uaaGCCGGAUa-UGCCGGCCGcCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 14373 0.67 0.450418
Target:  5'- ---gGGCCcgAUGCcgGGCCGcucguccggguGCGGCAGCa -3'
miRNA:   3'- uaagCCGGa-UAUG--CCGGC-----------CGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 14451 0.66 0.480672
Target:  5'- --gCGcGCCUcuuuCGaGCCGaGCGGCGGCa -3'
miRNA:   3'- uaaGC-CGGAuau-GC-CGGC-CGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 14889 0.69 0.324706
Target:  5'- -gUCGGCCgagugcagGUGCGGCaCGagugcgccaaGCGGCAAg -3'
miRNA:   3'- uaAGCCGGa-------UAUGCCG-GC----------CGCCGUUg -5'
24169 3' -57.8 NC_005263.2 + 14965 0.73 0.183193
Target:  5'- --cCGcGCC---AUGGCUGGCGGCAGCg -3'
miRNA:   3'- uaaGC-CGGauaUGCCGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 15353 0.66 0.522473
Target:  5'- -gUCGGUCgcauUGC-GCCGcgcaaGCGGCAGCg -3'
miRNA:   3'- uaAGCCGGau--AUGcCGGC-----CGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 15431 0.68 0.393232
Target:  5'- --cCGGCCguacagGUACGGCgCGa-GGCAGCg -3'
miRNA:   3'- uaaGCCGGa-----UAUGCCG-GCcgCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 15678 0.69 0.357821
Target:  5'- -cUUGGCgUGccaagaGCGGCCGGCGagcucGCAGCg -3'
miRNA:   3'- uaAGCCGgAUa-----UGCCGGCCGC-----CGUUG- -5'
24169 3' -57.8 NC_005263.2 + 16366 0.68 0.402434
Target:  5'- --gCGGCCgcguCGcUCGGCGGCGGCc -3'
miRNA:   3'- uaaGCCGGauauGCcGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 16561 0.71 0.239284
Target:  5'- ----cGCCUGgGCagcgacgccaaGGCCGGCGGCGACg -3'
miRNA:   3'- uaagcCGGAUaUG-----------CCGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 16767 0.69 0.316791
Target:  5'- -gUCGcGCCUG-ACGGCCGcCGGCGu- -3'
miRNA:   3'- uaAGC-CGGAUaUGCCGGCcGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 17024 0.67 0.42124
Target:  5'- cUUCGagaacgauGUCgcaGCGGCUGGUGGCGGCg -3'
miRNA:   3'- uAAGC--------CGGauaUGCCGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 17323 0.71 0.233084
Target:  5'- aAUUCGGCCcg-GC-GCCGGUGGCuuCg -3'
miRNA:   3'- -UAAGCCGGauaUGcCGGCCGCCGuuG- -5'
24169 3' -57.8 NC_005263.2 + 17742 0.69 0.357821
Target:  5'- -cUC-GCaCUcgGC-GCCGGCGGCAGCg -3'
miRNA:   3'- uaAGcCG-GAuaUGcCGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 18163 0.67 0.42124
Target:  5'- -aUCGGCg---GCGGCguUGGCGGCAu- -3'
miRNA:   3'- uaAGCCGgauaUGCCG--GCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 18618 0.7 0.309023
Target:  5'- --gCGGCgUucGCGGCaGGUGGCAACc -3'
miRNA:   3'- uaaGCCGgAuaUGCCGgCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 19387 0.67 0.440567
Target:  5'- -gUCaGCCUcgGCGGCgCGcaguaCGGCAACg -3'
miRNA:   3'- uaAGcCGGAuaUGCCG-GCc----GCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 19746 0.71 0.265468
Target:  5'- -aUCGGCgCUG-GCGcGCUGGCGGCGc- -3'
miRNA:   3'- uaAGCCG-GAUaUGC-CGGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 20406 0.71 0.239284
Target:  5'- ----aGCCUAUGCGGCCGcCGGCGccgGCg -3'
miRNA:   3'- uaagcCGGAUAUGCCGGCcGCCGU---UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.