miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 3' -57.8 NC_005263.2 + 1347 0.7 0.279408
Target:  5'- --aCGGCCgguUGCagaaucuuuuuGCCGGCGGCGGCc -3'
miRNA:   3'- uaaGCCGGau-AUGc----------CGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 2645 0.68 0.366461
Target:  5'- -aUCGcGCUUGc-CGGCguauCGGCGGCGACa -3'
miRNA:   3'- uaAGC-CGGAUauGCCG----GCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 2678 0.69 0.316791
Target:  5'- --gCaGCCUgcaGUGuCGcGCCGGCGGCGGCc -3'
miRNA:   3'- uaaGcCGGA---UAU-GC-CGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 3301 0.66 0.470475
Target:  5'- uUUCuuGCCUGggcGCGGCCGcGCGGUguucAACg -3'
miRNA:   3'- uAAGc-CGGAUa--UGCCGGC-CGCCG----UUG- -5'
24169 3' -57.8 NC_005263.2 + 4541 0.66 0.480672
Target:  5'- --gCGGCgCUGUGCcGaCGGCGGCAu- -3'
miRNA:   3'- uaaGCCG-GAUAUGcCgGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 4581 0.67 0.444493
Target:  5'- -gUCGGCaaucgucuuuuccaUGaACGGCCGcGCcGGCAGCu -3'
miRNA:   3'- uaAGCCGg-------------AUaUGCCGGC-CG-CCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 5785 0.66 0.470475
Target:  5'- -gUCGGCaccuUGCGGCCGGUcGCu-- -3'
miRNA:   3'- uaAGCCGgau-AUGCCGGCCGcCGuug -5'
24169 3' -57.8 NC_005263.2 + 5847 0.68 0.363854
Target:  5'- -gUCGGCCgucGUGCGGUCgaagucgagccgcaGGCGGUAc- -3'
miRNA:   3'- uaAGCCGGa--UAUGCCGG--------------CCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 8879 0.69 0.324706
Target:  5'- --gCGGCCcGUGCuGCCGGU-GCAGCg -3'
miRNA:   3'- uaaGCCGGaUAUGcCGGCCGcCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 9356 0.67 0.42124
Target:  5'- -aUCGGUgaAgGCGagcGCCGGCGGCuGCg -3'
miRNA:   3'- uaAGCCGgaUaUGC---CGGCCGCCGuUG- -5'
24169 3' -57.8 NC_005263.2 + 9518 0.74 0.164211
Target:  5'- ---gGGCUgaaucGUGCGGCCGugcGCGGCAGCg -3'
miRNA:   3'- uaagCCGGa----UAUGCCGGC---CGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 10162 0.74 0.155398
Target:  5'- -aUCGGCCgguUGCGcaccggcuGCCGGCGGCGc- -3'
miRNA:   3'- uaAGCCGGau-AUGC--------CGGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 10389 0.66 0.470475
Target:  5'- --aCGcGCCgggcCGGCCGGCGaGCGGg -3'
miRNA:   3'- uaaGC-CGGauauGCCGGCCGC-CGUUg -5'
24169 3' -57.8 NC_005263.2 + 10570 0.7 0.309023
Target:  5'- --gUGGCCg---UGGCCGGCGGCc-- -3'
miRNA:   3'- uaaGCCGGauauGCCGGCCGCCGuug -5'
24169 3' -57.8 NC_005263.2 + 11159 0.7 0.272366
Target:  5'- --gCaGCCUAgcUGGCCGGCuGCGACa -3'
miRNA:   3'- uaaGcCGGAUauGCCGGCCGcCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 11958 0.69 0.338495
Target:  5'- ---aGGCCgucgccaaccucacUAUACGGCaGGCGcGCAGCg -3'
miRNA:   3'- uaagCCGG--------------AUAUGCCGgCCGC-CGUUG- -5'
24169 3' -57.8 NC_005263.2 + 12545 0.69 0.357821
Target:  5'- cGUUC-GCg---GCGGCCGGCGGCGc- -3'
miRNA:   3'- -UAAGcCGgauaUGCCGGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 13153 0.68 0.375244
Target:  5'- -aUC-GCCUAUAUGGCUGcCGGCAcgGCa -3'
miRNA:   3'- uaAGcCGGAUAUGCCGGCcGCCGU--UG- -5'
24169 3' -57.8 NC_005263.2 + 13550 0.66 0.501381
Target:  5'- uUUCGGCacggUGUACGGgCG-CGGCAcgaGCg -3'
miRNA:   3'- uAAGCCGg---AUAUGCCgGCcGCCGU---UG- -5'
24169 3' -57.8 NC_005263.2 + 14092 0.71 0.252096
Target:  5'- -gUCGGCUgGUAcCGGCUGcGCGGCGGu -3'
miRNA:   3'- uaAGCCGGaUAU-GCCGGC-CGCCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.