miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 3' -57.8 NC_005263.2 + 25990 0.76 0.117466
Target:  5'- -aUCGcGCUUGcaGCGuGCCGGCGGCAGCc -3'
miRNA:   3'- uaAGC-CGGAUa-UGC-CGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 42014 0.69 0.340973
Target:  5'- --cCGGCa-GUGCGGCCGGCcGCGc- -3'
miRNA:   3'- uaaGCCGgaUAUGCCGGCCGcCGUug -5'
24169 3' -57.8 NC_005263.2 + 15678 0.69 0.357821
Target:  5'- -cUUGGCgUGccaagaGCGGCCGGCGagcucGCAGCg -3'
miRNA:   3'- uaAGCCGgAUa-----UGCCGGCCGC-----CGUUG- -5'
24169 3' -57.8 NC_005263.2 + 15353 0.66 0.522473
Target:  5'- -gUCGGUCgcauUGC-GCCGcgcaaGCGGCAGCg -3'
miRNA:   3'- uaAGCCGGau--AUGcCGGC-----CGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 31614 0.73 0.188232
Target:  5'- --cCGGUCgcgACGGCCGcGCGGCGcaGCg -3'
miRNA:   3'- uaaGCCGGauaUGCCGGC-CGCCGU--UG- -5'
24169 3' -57.8 NC_005263.2 + 35764 0.72 0.204089
Target:  5'- --gCGGUUacUGCGGCUGGCGGCGu- -3'
miRNA:   3'- uaaGCCGGauAUGCCGGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 14166 0.71 0.252096
Target:  5'- cUUCgGGCCg--GCGGCCGGUGuGCGc- -3'
miRNA:   3'- uAAG-CCGGauaUGCCGGCCGC-CGUug -5'
24169 3' -57.8 NC_005263.2 + 14092 0.71 0.252096
Target:  5'- -gUCGGCUgGUAcCGGCUGcGCGGCGGu -3'
miRNA:   3'- uaAGCCGGaUAU-GCCGGC-CGCCGUUg -5'
24169 3' -57.8 NC_005263.2 + 1347 0.7 0.279408
Target:  5'- --aCGGCCgguUGCagaaucuuuuuGCCGGCGGCGGCc -3'
miRNA:   3'- uaaGCCGGau-AUGc----------CGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 14889 0.69 0.324706
Target:  5'- -gUCGGCCgagugcagGUGCGGCaCGagugcgccaaGCGGCAAg -3'
miRNA:   3'- uaAGCCGGa-------UAUGCCG-GC----------CGCCGUUg -5'
24169 3' -57.8 NC_005263.2 + 42236 0.7 0.286594
Target:  5'- cUUCGGCCcGUACcGCCuGCGGCucGACu -3'
miRNA:   3'- uAAGCCGGaUAUGcCGGcCGCCG--UUG- -5'
24169 3' -57.8 NC_005263.2 + 11159 0.7 0.272366
Target:  5'- --gCaGCCUAgcUGGCCGGCuGCGACa -3'
miRNA:   3'- uaaGcCGGAUauGCCGGCCGcCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 22495 0.76 0.120832
Target:  5'- --cCGGCg---GCGGCCGGCGGCGGu -3'
miRNA:   3'- uaaGCCGgauaUGCCGGCCGCCGUUg -5'
24169 3' -57.8 NC_005263.2 + 18618 0.7 0.309023
Target:  5'- --gCGGCgUucGCGGCaGGUGGCAACc -3'
miRNA:   3'- uaaGCCGgAuaUGCCGgCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 10162 0.74 0.155398
Target:  5'- -aUCGGCCgguUGCGcaccggcuGCCGGCGGCGc- -3'
miRNA:   3'- uaAGCCGGau-AUGC--------CGGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 19746 0.71 0.265468
Target:  5'- -aUCGGCgCUG-GCGcGCUGGCGGCGc- -3'
miRNA:   3'- uaAGCCG-GAUaUGC-CGGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 2678 0.69 0.316791
Target:  5'- --gCaGCCUgcaGUGuCGcGCCGGCGGCGGCc -3'
miRNA:   3'- uaaGcCGGA---UAU-GC-CGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 12545 0.69 0.357821
Target:  5'- cGUUC-GCg---GCGGCCGGCGGCGc- -3'
miRNA:   3'- -UAAGcCGgauaUGCCGGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 9518 0.74 0.164211
Target:  5'- ---gGGCUgaaucGUGCGGCCGugcGCGGCAGCg -3'
miRNA:   3'- uaagCCGGa----UAUGCCGGC---CGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 20406 0.71 0.239284
Target:  5'- ----aGCCUAUGCGGCCGcCGGCGccgGCg -3'
miRNA:   3'- uaagcCGGAUAUGCCGGCcGCCGU---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.