miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 3' -57.8 NC_005263.2 + 24820 1.08 0.000489
Target:  5'- uAUUCGGCCUAUACGGCCGGCGGCAACg -3'
miRNA:   3'- -UAAGCCGGAUAUGCCGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 34364 0.78 0.080995
Target:  5'- --cCGGCCUG-GCcGCCGGCGGUAACg -3'
miRNA:   3'- uaaGCCGGAUaUGcCGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 26186 0.78 0.088308
Target:  5'- --aCGGUCU--GCGGCCGcGCGGCGGCc -3'
miRNA:   3'- uaaGCCGGAuaUGCCGGC-CGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 25990 0.76 0.117466
Target:  5'- -aUCGcGCUUGcaGCGuGCCGGCGGCAGCc -3'
miRNA:   3'- uaAGC-CGGAUa-UGC-CGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 22495 0.76 0.120832
Target:  5'- --cCGGCg---GCGGCCGGCGGCGGu -3'
miRNA:   3'- uaaGCCGgauaUGCCGGCCGCCGUUg -5'
24169 3' -57.8 NC_005263.2 + 24084 0.75 0.124288
Target:  5'- -gUCGaCCgAUcCGGCCGGCGGCGGCu -3'
miRNA:   3'- uaAGCcGGaUAuGCCGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 14258 0.75 0.139047
Target:  5'- --cUGGCUUGcgGCGGCCGGC-GCAACg -3'
miRNA:   3'- uaaGCCGGAUa-UGCCGGCCGcCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 10162 0.74 0.155398
Target:  5'- -aUCGGCCgguUGCGcaccggcuGCCGGCGGCGc- -3'
miRNA:   3'- uaAGCCGGau-AUGC--------CGGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 9518 0.74 0.164211
Target:  5'- ---gGGCUgaaucGUGCGGCCGugcGCGGCAGCg -3'
miRNA:   3'- uaagCCGGa----UAUGCCGGC---CGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 21803 0.73 0.173471
Target:  5'- --cCGGCCUGcagcUGGCCGGCGaGCAAg -3'
miRNA:   3'- uaaGCCGGAUau--GCCGGCCGC-CGUUg -5'
24169 3' -57.8 NC_005263.2 + 27363 0.73 0.173471
Target:  5'- ---aGGCCgccagcgaGCGGCgCGGCGGCGGCc -3'
miRNA:   3'- uaagCCGGaua-----UGCCG-GCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 14965 0.73 0.183193
Target:  5'- --cCGcGCC---AUGGCUGGCGGCAGCg -3'
miRNA:   3'- uaaGC-CGGauaUGCCGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 31614 0.73 0.188232
Target:  5'- --cCGGUCgcgACGGCCGcGCGGCGcaGCg -3'
miRNA:   3'- uaaGCCGGauaUGCCGGC-CGCCGU--UG- -5'
24169 3' -57.8 NC_005263.2 + 35764 0.72 0.204089
Target:  5'- --gCGGUUacUGCGGCUGGCGGCGu- -3'
miRNA:   3'- uaaGCCGGauAUGCCGGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 46270 0.72 0.22109
Target:  5'- --cCGGCCUgcacacuuugGUAcuCGGaCGGCGGCAGCa -3'
miRNA:   3'- uaaGCCGGA----------UAU--GCCgGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 27681 0.72 0.226421
Target:  5'- --aCGGCCgccuucuUGUGCGcGCCGGCgccGGCGGCc -3'
miRNA:   3'- uaaGCCGG-------AUAUGC-CGGCCG---CCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 17323 0.71 0.233084
Target:  5'- aAUUCGGCCcg-GC-GCCGGUGGCuuCg -3'
miRNA:   3'- -UAAGCCGGauaUGcCGGCCGCCGuuG- -5'
24169 3' -57.8 NC_005263.2 + 44552 0.71 0.239284
Target:  5'- -gUCGGCCg--ACGcGCUGcGCGGCAcuGCg -3'
miRNA:   3'- uaAGCCGGauaUGC-CGGC-CGCCGU--UG- -5'
24169 3' -57.8 NC_005263.2 + 20406 0.71 0.239284
Target:  5'- ----aGCCUAUGCGGCCGcCGGCGccgGCg -3'
miRNA:   3'- uaagcCGGAUAUGCCGGCcGCCGU---UG- -5'
24169 3' -57.8 NC_005263.2 + 16561 0.71 0.239284
Target:  5'- ----cGCCUGgGCagcgacgccaaGGCCGGCGGCGACg -3'
miRNA:   3'- uaagcCGGAUaUG-----------CCGGCCGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.