miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 3' -57.8 NC_005263.2 + 18618 0.7 0.309023
Target:  5'- --gCGGCgUucGCGGCaGGUGGCAACc -3'
miRNA:   3'- uaaGCCGgAuaUGCCGgCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 9518 0.74 0.164211
Target:  5'- ---gGGCUgaaucGUGCGGCCGugcGCGGCAGCg -3'
miRNA:   3'- uaagCCGGa----UAUGCCGGC---CGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 13550 0.66 0.501381
Target:  5'- uUUCGGCacggUGUACGGgCG-CGGCAcgaGCg -3'
miRNA:   3'- uAAGCCGg---AUAUGCCgGCcGCCGU---UG- -5'
24169 3' -57.8 NC_005263.2 + 32647 0.67 0.434716
Target:  5'- --gCGGCCgaaaGCcuuccggauggcgcgGGUCGGCGGCGAUg -3'
miRNA:   3'- uaaGCCGGaua-UG---------------CCGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 42014 0.69 0.340973
Target:  5'- --cCGGCa-GUGCGGCCGGCcGCGc- -3'
miRNA:   3'- uaaGCCGgaUAUGCCGGCCGcCGUug -5'
24169 3' -57.8 NC_005263.2 + 10162 0.74 0.155398
Target:  5'- -aUCGGCCgguUGCGcaccggcuGCCGGCGGCGc- -3'
miRNA:   3'- uaAGCCGGau-AUGC--------CGGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 44111 0.67 0.411771
Target:  5'- -aUCGGUCagGUGCGcuGCuCGGCGGCGcGCg -3'
miRNA:   3'- uaAGCCGGa-UAUGC--CG-GCCGCCGU-UG- -5'
24169 3' -57.8 NC_005263.2 + 22495 0.76 0.120832
Target:  5'- --cCGGCg---GCGGCCGGCGGCGGu -3'
miRNA:   3'- uaaGCCGgauaUGCCGGCCGCCGUUg -5'
24169 3' -57.8 NC_005263.2 + 25990 0.76 0.117466
Target:  5'- -aUCGcGCUUGcaGCGuGCCGGCGGCAGCc -3'
miRNA:   3'- uaAGC-CGGAUa-UGC-CGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 11159 0.7 0.272366
Target:  5'- --gCaGCCUAgcUGGCCGGCuGCGACa -3'
miRNA:   3'- uaaGcCGGAUauGCCGGCCGcCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 12545 0.69 0.357821
Target:  5'- cGUUC-GCg---GCGGCCGGCGGCGc- -3'
miRNA:   3'- -UAAGcCGgauaUGCCGGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 15431 0.68 0.393232
Target:  5'- --cCGGCCguacagGUACGGCgCGa-GGCAGCg -3'
miRNA:   3'- uaaGCCGGa-----UAUGCCG-GCcgCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 35517 0.67 0.439589
Target:  5'- --gUGGCCccguaagUGUGCcGCCGGCgaucGGCAGCa -3'
miRNA:   3'- uaaGCCGG-------AUAUGcCGGCCG----CCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 21904 0.67 0.458385
Target:  5'- --aCGGCCgccgcaucgcGCGGCCGccgcGCGGCcGCa -3'
miRNA:   3'- uaaGCCGGaua-------UGCCGGC----CGCCGuUG- -5'
24169 3' -57.8 NC_005263.2 + 46116 0.66 0.511882
Target:  5'- --gCGGCCUAggACaGUCGGUGaGCAAa -3'
miRNA:   3'- uaaGCCGGAUa-UGcCGGCCGC-CGUUg -5'
24169 3' -57.8 NC_005263.2 + 1347 0.7 0.279408
Target:  5'- --aCGGCCgguUGCagaaucuuuuuGCCGGCGGCGGCc -3'
miRNA:   3'- uaaGCCGGau-AUGc----------CGGCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 31614 0.73 0.188232
Target:  5'- --cCGGUCgcgACGGCCGcGCGGCGcaGCg -3'
miRNA:   3'- uaaGCCGGauaUGCCGGC-CGCCGU--UG- -5'
24169 3' -57.8 NC_005263.2 + 14166 0.71 0.252096
Target:  5'- cUUCgGGCCg--GCGGCCGGUGuGCGc- -3'
miRNA:   3'- uAAG-CCGGauaUGCCGGCCGC-CGUug -5'
24169 3' -57.8 NC_005263.2 + 24991 0.69 0.357821
Target:  5'- --cCGGCCUggccgcaaccggGUAUGGCUgcgguGGCGGUGGCu -3'
miRNA:   3'- uaaGCCGGA------------UAUGCCGG-----CCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 18163 0.67 0.42124
Target:  5'- -aUCGGCg---GCGGCguUGGCGGCAu- -3'
miRNA:   3'- uaAGCCGgauaUGCCG--GCCGCCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.