miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 5' -64.2 NC_005263.2 + 8977 0.67 0.245608
Target:  5'- aCGGUGCGCCgacguugaucuGGCCGGCcaccacgucccacaGGauuuuCGuGCCg -3'
miRNA:   3'- -GCCACGCGG-----------UCGGCCG--------------CCgau--GC-CGG- -5'
24169 5' -64.2 NC_005263.2 + 35449 0.67 0.242005
Target:  5'- cCGGcGCGCCGGCCgacgacgauaucgacGGCGuGCUcaccuacguccagcGCauGGCCg -3'
miRNA:   3'- -GCCaCGCGGUCGG---------------CCGC-CGA--------------UG--CCGG- -5'
24169 5' -64.2 NC_005263.2 + 16361 0.67 0.241409
Target:  5'- ---aGCGCgCGGCCGcgucgcuCGGCgGCGGCCu -3'
miRNA:   3'- gccaCGCG-GUCGGCc------GCCGaUGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 19747 0.67 0.241409
Target:  5'- uCGGcgcugGCGC--GCUGGCGGCgcucgUGGCCg -3'
miRNA:   3'- -GCCa----CGCGguCGGCCGCCGau---GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 18957 0.67 0.241409
Target:  5'- cCGGUucgaGCG-CAGCCGGCacgacgucuGGUUucgcuCGGCCg -3'
miRNA:   3'- -GCCA----CGCgGUCGGCCG---------CCGAu----GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 35362 0.67 0.235515
Target:  5'- aGGUGaucCGCCcugaucAGgUGGCGGC-GCGGCUg -3'
miRNA:   3'- gCCAC---GCGG------UCgGCCGCCGaUGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 20803 0.67 0.229742
Target:  5'- gGGUcGCGCCGugguauuucuGCagGcGCGGCU-CGGCCu -3'
miRNA:   3'- gCCA-CGCGGU----------CGg-C-CGCCGAuGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 18876 0.67 0.229742
Target:  5'- uCGGcGCGCCGcugcgcGCCGaCGGCaaaUACGcGCCg -3'
miRNA:   3'- -GCCaCGCGGU------CGGCcGCCG---AUGC-CGG- -5'
24169 5' -64.2 NC_005263.2 + 26704 0.67 0.229742
Target:  5'- --aUGCGCCgAGCaGGcCGGCcUGCGGCa -3'
miRNA:   3'- gccACGCGG-UCGgCC-GCCG-AUGCCGg -5'
24169 5' -64.2 NC_005263.2 + 44173 0.67 0.224089
Target:  5'- ---gGCGCCAaccuGCCGGuCGGCcUGCcGCCa -3'
miRNA:   3'- gccaCGCGGU----CGGCC-GCCG-AUGcCGG- -5'
24169 5' -64.2 NC_005263.2 + 14074 0.67 0.22353
Target:  5'- ---cGCGCCGcGCCGGCccaugucGGCUGguacCGGCUg -3'
miRNA:   3'- gccaCGCGGU-CGGCCG-------CCGAU----GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 22875 0.67 0.218555
Target:  5'- aCGGauuCGUCGGCCGGgauCGGC-ACGGCg -3'
miRNA:   3'- -GCCac-GCGGUCGGCC---GCCGaUGCCGg -5'
24169 5' -64.2 NC_005263.2 + 47192 0.67 0.218555
Target:  5'- uCGaUGCGUCGacgaguaacccGCCGGCGGCgACcGCCg -3'
miRNA:   3'- -GCcACGCGGU-----------CGGCCGCCGaUGcCGG- -5'
24169 5' -64.2 NC_005263.2 + 15458 0.68 0.213138
Target:  5'- ---cGCGCCAuCCGGaaGGCUuuCGGCCg -3'
miRNA:   3'- gccaCGCGGUcGGCCg-CCGAu-GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 15423 0.68 0.213138
Target:  5'- cCGGUGaGCCGGCCGuacaGG-UACGGCg -3'
miRNA:   3'- -GCCACgCGGUCGGCcg--CCgAUGCCGg -5'
24169 5' -64.2 NC_005263.2 + 35828 0.68 0.213138
Target:  5'- cCGGgucgcuUGUGCCcugcaGGUCGGCaaaaaacaacGGCUGCGGCa -3'
miRNA:   3'- -GCC------ACGCGG-----UCGGCCG----------CCGAUGCCGg -5'
24169 5' -64.2 NC_005263.2 + 3202 0.68 0.207836
Target:  5'- cCGGUGaGCCGGcCCGGCGcGCcGCccGCCc -3'
miRNA:   3'- -GCCACgCGGUC-GGCCGC-CGaUGc-CGG- -5'
24169 5' -64.2 NC_005263.2 + 20954 0.68 0.202649
Target:  5'- aCGGccgcGCGCUGucggacaucGCCGacGCGGCUGCGcGCCu -3'
miRNA:   3'- -GCCa---CGCGGU---------CGGC--CGCCGAUGC-CGG- -5'
24169 5' -64.2 NC_005263.2 + 24543 0.68 0.202649
Target:  5'- gGGUucGUGCCuGCCGGCugcGGgaACaGGCCc -3'
miRNA:   3'- gCCA--CGCGGuCGGCCG---CCgaUG-CCGG- -5'
24169 5' -64.2 NC_005263.2 + 18596 0.68 0.202649
Target:  5'- uGGcGCGCCGacggacGCCGcaGCGGCguucGCGGCa -3'
miRNA:   3'- gCCaCGCGGU------CGGC--CGCCGa---UGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.