miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 5' -64.2 NC_005263.2 + 10167 0.71 0.126305
Target:  5'- nCGGuUGCGCaccggcuGCCGGCGGCgcgccugcgccCGGCUg -3'
miRNA:   3'- -GCC-ACGCGgu-----CGGCCGCCGau---------GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 10395 0.68 0.187758
Target:  5'- ---cGgGCCGGCCGGCGaGCgggucCGGCg -3'
miRNA:   3'- gccaCgCGGUCGGCCGC-CGau---GCCGg -5'
24169 5' -64.2 NC_005263.2 + 11142 0.66 0.272081
Target:  5'- uGGUaacaaccGCGCCcgcagccuAGCUGGcCGGCUGCGacacgcgguuaaGCCg -3'
miRNA:   3'- gCCA-------CGCGG--------UCGGCC-GCCGAUGC------------CGG- -5'
24169 5' -64.2 NC_005263.2 + 12549 0.68 0.197575
Target:  5'- ---cGCGgCGGCCGGCGGCgccguaGCGcCCg -3'
miRNA:   3'- gccaCGCgGUCGGCCGCCGa-----UGCcGG- -5'
24169 5' -64.2 NC_005263.2 + 12577 0.71 0.130387
Target:  5'- -cGUGCuGCCGaucGCCGGCGGCacacuUACggGGCCa -3'
miRNA:   3'- gcCACG-CGGU---CGGCCGCCG-----AUG--CCGG- -5'
24169 5' -64.2 NC_005263.2 + 13623 0.66 0.293057
Target:  5'- gGGUGCGCgCGGCCGaacGCcugaucauGGaugACGGUCg -3'
miRNA:   3'- gCCACGCG-GUCGGC---CG--------CCga-UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 13742 0.69 0.183012
Target:  5'- ---gGCGUUAccGCCGGCGGCca-GGCCg -3'
miRNA:   3'- gccaCGCGGU--CGGCCGCCGaugCCGG- -5'
24169 5' -64.2 NC_005263.2 + 14074 0.67 0.22353
Target:  5'- ---cGCGCCGcGCCGGCccaugucGGCUGguacCGGCUg -3'
miRNA:   3'- gccaCGCGGU-CGGCCG-------CCGAU----GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 14114 0.69 0.156714
Target:  5'- gCGGU-CGCCgucgcgaucguAGCCGcaGCGGCcagcGCGGCCg -3'
miRNA:   3'- -GCCAcGCGG-----------UCGGC--CGCCGa---UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 14247 0.7 0.14113
Target:  5'- uGGcGUGCgGGCUGGCuuGCgGCGGCCg -3'
miRNA:   3'- gCCaCGCGgUCGGCCGc-CGaUGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 14960 0.66 0.293057
Target:  5'- aGGcgccGCGCCauGGCUGGCGGCaGCGaUCu -3'
miRNA:   3'- gCCa---CGCGG--UCGGCCGCCGaUGCcGG- -5'
24169 5' -64.2 NC_005263.2 + 15245 0.66 0.272739
Target:  5'- uGGUGCuGuCCGGCUacaugcuGCGGCUugucGCGGCg -3'
miRNA:   3'- gCCACG-C-GGUCGGc------CGCCGA----UGCCGg -5'
24169 5' -64.2 NC_005263.2 + 15423 0.68 0.213138
Target:  5'- cCGGUGaGCCGGCCGuacaGG-UACGGCg -3'
miRNA:   3'- -GCCACgCGGUCGGCcg--CCgAUGCCGg -5'
24169 5' -64.2 NC_005263.2 + 15458 0.68 0.213138
Target:  5'- ---cGCGCCAuCCGGaaGGCUuuCGGCCg -3'
miRNA:   3'- gccaCGCGGUcGGCCg-CCGAu-GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 15680 0.66 0.286156
Target:  5'- uGGcGUGCCaagagcGGCCGGCGaGCUcgcagcgacuACGGgCg -3'
miRNA:   3'- gCCaCGCGG------UCGGCCGC-CGA----------UGCCgG- -5'
24169 5' -64.2 NC_005263.2 + 16361 0.67 0.241409
Target:  5'- ---aGCGCgCGGCCGcgucgcuCGGCgGCGGCCu -3'
miRNA:   3'- gccaCGCG-GUCGGCc------GCCGaUGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 16565 0.68 0.197575
Target:  5'- uGGgcagcGaCGCCaaGGCCGGCGGCgacGCGuucGCCg -3'
miRNA:   3'- gCCa----C-GCGG--UCGGCCGCCGa--UGC---CGG- -5'
24169 5' -64.2 NC_005263.2 + 17250 0.66 0.272739
Target:  5'- gCGGUGUuCCAGCCGcGuCGGaacauCGGCg -3'
miRNA:   3'- -GCCACGcGGUCGGC-C-GCCgau--GCCGg -5'
24169 5' -64.2 NC_005263.2 + 17313 0.69 0.171168
Target:  5'- aCGGcGCGCgAauucggcccggcGCCGGUGGCUucgacguucggcaucGCGGUCg -3'
miRNA:   3'- -GCCaCGCGgU------------CGGCCGCCGA---------------UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 17400 0.71 0.127314
Target:  5'- gCGGccgcGCGCCuGGCgGGCGGUgucgcaggugcaacaGCGGCCa -3'
miRNA:   3'- -GCCa---CGCGG-UCGgCCGCCGa--------------UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.