miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 5' -64.2 NC_005263.2 + 875 0.71 0.117237
Target:  5'- ---cGUGCCGGCCGGCGcuucguucaGCgcgGCGGUCg -3'
miRNA:   3'- gccaCGCGGUCGGCCGC---------CGa--UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 2264 0.66 0.266221
Target:  5'- ---cGCGCCGcgcGCuCGGCcaaGGUUGCGGUCa -3'
miRNA:   3'- gccaCGCGGU---CG-GCCG---CCGAUGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 2638 0.69 0.173839
Target:  5'- gCGGUucaucGCGCUuGCCGGCGuaUcgGCGGCg -3'
miRNA:   3'- -GCCA-----CGCGGuCGGCCGCcgA--UGCCGg -5'
24169 5' -64.2 NC_005263.2 + 2687 0.66 0.259831
Target:  5'- ---aGUGUCGcGCCGGCGGC---GGCCg -3'
miRNA:   3'- gccaCGCGGU-CGGCCGCCGaugCCGG- -5'
24169 5' -64.2 NC_005263.2 + 3193 0.66 0.272739
Target:  5'- cCGcUGCGC--GUCGGCGaGC-GCGGCCa -3'
miRNA:   3'- -GCcACGCGguCGGCCGC-CGaUGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 3202 0.68 0.207836
Target:  5'- cCGGUGaGCCGGcCCGGCGcGCcGCccGCCc -3'
miRNA:   3'- -GCCACgCGGUC-GGCCGC-CGaUGc-CGG- -5'
24169 5' -64.2 NC_005263.2 + 3323 0.69 0.182544
Target:  5'- gCGGUguucaacgucugcGCGCC-GCCGGCGccGCgcGCGGUCg -3'
miRNA:   3'- -GCCA-------------CGCGGuCGGCCGC--CGa-UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 3854 0.68 0.197575
Target:  5'- gGGUG-GUCAGCCGGCguccaguccgGGU--UGGCCg -3'
miRNA:   3'- gCCACgCGGUCGGCCG----------CCGauGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 3910 0.73 0.078199
Target:  5'- uGGUaGCGCCGGgCGGCaauGGCgGCaGGCCg -3'
miRNA:   3'- gCCA-CGCGGUCgGCCG---CCGaUG-CCGG- -5'
24169 5' -64.2 NC_005263.2 + 3952 0.7 0.137462
Target:  5'- ---cGCGCCAGCCaGCGaGCcugGCaGGCCg -3'
miRNA:   3'- gccaCGCGGUCGGcCGC-CGa--UG-CCGG- -5'
24169 5' -64.2 NC_005263.2 + 5012 0.68 0.187758
Target:  5'- aCGGUGCcuuccGCCgcgcucgacAGCCGGCccg-GCGGCCg -3'
miRNA:   3'- -GCCACG-----CGG---------UCGGCCGccgaUGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 6788 0.72 0.108196
Target:  5'- uCGGUGaCGCCGGCgGGCGGCgucaAUuGCa -3'
miRNA:   3'- -GCCAC-GCGGUCGgCCGCCGa---UGcCGg -5'
24169 5' -64.2 NC_005263.2 + 7406 0.71 0.111135
Target:  5'- gCGaGUGCGCCGaacaguucGUCGGCcGCUuCGGCCu -3'
miRNA:   3'- -GC-CACGCGGU--------CGGCCGcCGAuGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 8109 0.66 0.272739
Target:  5'- uCGGacauCGCC-GUCGGCGGCa--GGCCc -3'
miRNA:   3'- -GCCac--GCGGuCGGCCGCCGaugCCGG- -5'
24169 5' -64.2 NC_005263.2 + 8817 0.71 0.120403
Target:  5'- --aUGCGCCuGCCGGCcGCU-CGGCg -3'
miRNA:   3'- gccACGCGGuCGGCCGcCGAuGCCGg -5'
24169 5' -64.2 NC_005263.2 + 8977 0.67 0.245608
Target:  5'- aCGGUGCGCCgacguugaucuGGCCGGCcaccacgucccacaGGauuuuCGuGCCg -3'
miRNA:   3'- -GCCACGCGG-----------UCGGCCG--------------CCgau--GC-CGG- -5'
24169 5' -64.2 NC_005263.2 + 9198 0.7 0.137462
Target:  5'- gGGUGCGCaaaCgGGCGGCgcucgUACGGCg -3'
miRNA:   3'- gCCACGCGgucGgCCGCCG-----AUGCCGg -5'
24169 5' -64.2 NC_005263.2 + 9357 0.75 0.064562
Target:  5'- uCGGUGaagGCgAgcGCCGGCGGCUGCGGg- -3'
miRNA:   3'- -GCCACg--CGgU--CGGCCGCCGAUGCCgg -5'
24169 5' -64.2 NC_005263.2 + 9508 0.66 0.253566
Target:  5'- uCGcGUGCGCgGGCUGaaucguGCGGCcgugcGCGGCa -3'
miRNA:   3'- -GC-CACGCGgUCGGC------CGCCGa----UGCCGg -5'
24169 5' -64.2 NC_005263.2 + 10144 0.78 0.03509
Target:  5'- ---aGCGCCAGCCGGCgcGGCauCGGCCg -3'
miRNA:   3'- gccaCGCGGUCGGCCG--CCGauGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.