miRNA display CGI


Results 1 - 20 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 5' -64.2 NC_005263.2 + 22495 0.83 0.013465
Target:  5'- cCGGcgGCgGCCGGCggcgguuCGGCGGCUGCGGCCu -3'
miRNA:   3'- -GCCa-CG-CGGUCG-------GCCGCCGAUGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 26525 0.7 0.152678
Target:  5'- ---gGCGUCGacGCCGGCGGCgagcacGCGGCg -3'
miRNA:   3'- gccaCGCGGU--CGGCCGCCGa-----UGCCGg -5'
24169 5' -64.2 NC_005263.2 + 20413 0.7 0.152678
Target:  5'- gCGGc-CGCCGgcGCCGGCGcGCacaagaagGCGGCCg -3'
miRNA:   3'- -GCCacGCGGU--CGGCCGC-CGa-------UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 29049 0.66 0.293057
Target:  5'- ---cGCGCaGGCCGcGCGGCgcguccucgggGCGGCg -3'
miRNA:   3'- gccaCGCGgUCGGC-CGCCGa----------UGCCGg -5'
24169 5' -64.2 NC_005263.2 + 3910 0.73 0.078199
Target:  5'- uGGUaGCGCCGGgCGGCaauGGCgGCaGGCCg -3'
miRNA:   3'- gCCA-CGCGGUCgGCCG---CCGaUG-CCGG- -5'
24169 5' -64.2 NC_005263.2 + 29645 0.72 0.094569
Target:  5'- gGGUGUaCCAGCCGcGCGGCUGCuucacGCg -3'
miRNA:   3'- gCCACGcGGUCGGC-CGCCGAUGc----CGg -5'
24169 5' -64.2 NC_005263.2 + 37712 0.72 0.102537
Target:  5'- cCGGacccgcuCGCCGGCCGGCccGGCgcgugGCGGCUc -3'
miRNA:   3'- -GCCac-----GCGGUCGGCCG--CCGa----UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 19096 0.72 0.105331
Target:  5'- gCGGUGCGCaacgcacuGCCGGuCGGCcGC-GCCg -3'
miRNA:   3'- -GCCACGCGgu------CGGCC-GCCGaUGcCGG- -5'
24169 5' -64.2 NC_005263.2 + 20725 0.72 0.108196
Target:  5'- cCGGUcagcGCGCCGGCCGccgccGCGccGCUcgcugGCGGCCu -3'
miRNA:   3'- -GCCA----CGCGGUCGGC-----CGC--CGA-----UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 31614 0.7 0.148736
Target:  5'- cCGGUcGCGaCGGCCGcGCGGCgcaGcGCCg -3'
miRNA:   3'- -GCCA-CGCgGUCGGC-CGCCGaugC-CGG- -5'
24169 5' -64.2 NC_005263.2 + 33678 0.71 0.120403
Target:  5'- gCGG-GCGCgaaucuuggcgCAGCgCGGCGGCaaUACGcGCCa -3'
miRNA:   3'- -GCCaCGCG-----------GUCG-GCCGCCG--AUGC-CGG- -5'
24169 5' -64.2 NC_005263.2 + 6788 0.72 0.108196
Target:  5'- uCGGUGaCGCCGGCgGGCGGCgucaAUuGCa -3'
miRNA:   3'- -GCCAC-GCGGUCGgCCGCCGa---UGcCGg -5'
24169 5' -64.2 NC_005263.2 + 10144 0.78 0.03509
Target:  5'- ---aGCGCCAGCCGGCgcGGCauCGGCCg -3'
miRNA:   3'- gccaCGCGGUCGGCCG--CCGauGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 18642 0.71 0.12365
Target:  5'- cCGG-GCGCC-GCUGGCGG-UACGcuGCCg -3'
miRNA:   3'- -GCCaCGCGGuCGGCCGCCgAUGC--CGG- -5'
24169 5' -64.2 NC_005263.2 + 44118 0.77 0.041939
Target:  5'- aGGUGCGCU-GCuCGGCGGCgcgcgcccguuacaACGGCCu -3'
miRNA:   3'- gCCACGCGGuCG-GCCGCCGa-------------UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 21386 0.72 0.107907
Target:  5'- uGGUGCGCUucgcgcugccgcaGGCCGGCcuGCU-CGGCg -3'
miRNA:   3'- gCCACGCGG-------------UCGGCCGc-CGAuGCCGg -5'
24169 5' -64.2 NC_005263.2 + 10167 0.71 0.126305
Target:  5'- nCGGuUGCGCaccggcuGCCGGCGGCgcgccugcgccCGGCUg -3'
miRNA:   3'- -GCC-ACGCGgu-----CGGCCGCCGau---------GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 46683 0.7 0.152678
Target:  5'- ---cGCGCgCAGCCaaGGCGGC-GCGcGCCg -3'
miRNA:   3'- gccaCGCG-GUCGG--CCGCCGaUGC-CGG- -5'
24169 5' -64.2 NC_005263.2 + 38425 0.75 0.057831
Target:  5'- gGGUGCGCCGGCgugaCGcCGGCcACGGUCa -3'
miRNA:   3'- gCCACGCGGUCG----GCcGCCGaUGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 26629 0.72 0.099813
Target:  5'- aCGGUGCGCCGgauuuGCCaGUGGCgccgcaGCGGUg -3'
miRNA:   3'- -GCCACGCGGU-----CGGcCGCCGa-----UGCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.