Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24169 | 5' | -64.2 | NC_005263.2 | + | 29525 | 0.66 | 0.293057 |
Target: 5'- uCGGcGCGCCAGCa-GUGGCcgggAC-GCCa -3' miRNA: 3'- -GCCaCGCGGUCGgcCGCCGa---UGcCGG- -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 2264 | 0.66 | 0.266221 |
Target: 5'- ---cGCGCCGcgcGCuCGGCcaaGGUUGCGGUCa -3' miRNA: 3'- gccaCGCGGU---CG-GCCG---CCGAUGCCGG- -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 24938 | 0.66 | 0.259831 |
Target: 5'- uCGGUgGCGgCGGaCGGCGGUgcGCGGUUc -3' miRNA: 3'- -GCCA-CGCgGUCgGCCGCCGa-UGCCGG- -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 34024 | 0.66 | 0.259199 |
Target: 5'- cCGGUaccagccgacauGgGCCGGCgCGGCGcGCUcaaugcgcucgacGCGGCg -3' miRNA: 3'- -GCCA------------CgCGGUCG-GCCGC-CGA-------------UGCCGg -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 19773 | 0.66 | 0.253566 |
Target: 5'- -cGUGCGCCucacgGGCuCGGCGGCcgaccagauuCGcGCCg -3' miRNA: 3'- gcCACGCGG-----UCG-GCCGCCGau--------GC-CGG- -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 28937 | 0.66 | 0.253566 |
Target: 5'- gCGGccacgaGCCGcGCCGGCGGaugcACGGUCa -3' miRNA: 3'- -GCCacg---CGGU-CGGCCGCCga--UGCCGG- -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 9508 | 0.66 | 0.253566 |
Target: 5'- uCGcGUGCGCgGGCUGaaucguGCGGCcgugcGCGGCa -3' miRNA: 3'- -GC-CACGCGgUCGGC------CGCCGa----UGCCGg -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 35758 | 0.66 | 0.253566 |
Target: 5'- gCGG-GCGCgguuacugCGGCUGGCGGCgu--GCCa -3' miRNA: 3'- -GCCaCGCG--------GUCGGCCGCCGaugcCGG- -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 45721 | 0.66 | 0.257938 |
Target: 5'- uGGUGCcCCGGCCuGCcgcucggugcugagGGUUggcACGGCCu -3' miRNA: 3'- gCCACGcGGUCGGcCG--------------CCGA---UGCCGG- -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 30631 | 0.66 | 0.266221 |
Target: 5'- aGGaugcUGCGCCGGCCGGCGuugACG-UCg -3' miRNA: 3'- gCC----ACGCGGUCGGCCGCcgaUGCcGG- -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 30928 | 0.66 | 0.266221 |
Target: 5'- aCGGcguacGCGCgAGCUGcGCauucGGCUucuCGGCCg -3' miRNA: 3'- -GCCa----CGCGgUCGGC-CG----CCGAu--GCCGG- -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 15245 | 0.66 | 0.272739 |
Target: 5'- uGGUGCuGuCCGGCUacaugcuGCGGCUugucGCGGCg -3' miRNA: 3'- gCCACG-C-GGUCGGc------CGCCGA----UGCCGg -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 14960 | 0.66 | 0.293057 |
Target: 5'- aGGcgccGCGCCauGGCUGGCGGCaGCGaUCu -3' miRNA: 3'- gCCa---CGCGG--UCGGCCGCCGaUGCcGG- -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 38569 | 0.66 | 0.292362 |
Target: 5'- ---aGCGCCGcGUCGGUcGCUgccgcgcACGGCCg -3' miRNA: 3'- gccaCGCGGU-CGGCCGcCGA-------UGCCGG- -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 24598 | 0.66 | 0.286156 |
Target: 5'- uCGG-GCGCaGGCggUGGCGGCgcaGGUCa -3' miRNA: 3'- -GCCaCGCGgUCG--GCCGCCGaugCCGG- -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 30054 | 0.66 | 0.285473 |
Target: 5'- uGGUGCGUCaggauggcuucguAGCCGGCGaGUUugucgAUGGUg -3' miRNA: 3'- gCCACGCGG-------------UCGGCCGC-CGA-----UGCCGg -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 45453 | 0.66 | 0.283431 |
Target: 5'- cCGGUGuCGCCGccgauacGCCGGCaagcgcgaugaaccGcGCgguCGGCCu -3' miRNA: 3'- -GCCAC-GCGGU-------CGGCCG--------------C-CGau-GCCGG- -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 47304 | 0.66 | 0.279383 |
Target: 5'- uCGGUccuGCGCCggcGGCCGGCacGCUcaaGGUCg -3' miRNA: 3'- -GCCA---CGCGG---UCGGCCGc-CGAug-CCGG- -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 3193 | 0.66 | 0.272739 |
Target: 5'- cCGcUGCGC--GUCGGCGaGC-GCGGCCa -3' miRNA: 3'- -GCcACGCGguCGGCCGC-CGaUGCCGG- -5' |
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24169 | 5' | -64.2 | NC_005263.2 | + | 29755 | 0.66 | 0.272739 |
Target: 5'- aGGUGCGCCGGguUCuGCGGgUucagcaGCGuGCCg -3' miRNA: 3'- gCCACGCGGUC--GGcCGCCgA------UGC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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