miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 5' -64.2 NC_005263.2 + 24854 1.11 0.000086
Target:  5'- cCGGUGCGCCAGCCGGCGGCUACGGCCa -3'
miRNA:   3'- -GCCACGCGGUCGGCCGCCGAUGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 22495 0.83 0.013465
Target:  5'- cCGGcgGCgGCCGGCggcgguuCGGCGGCUGCGGCCu -3'
miRNA:   3'- -GCCa-CG-CGGUCG-------GCCGCCGAUGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 10144 0.78 0.03509
Target:  5'- ---aGCGCCAGCCGGCgcGGCauCGGCCg -3'
miRNA:   3'- gccaCGCGGUCGGCCG--CCGauGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 44118 0.77 0.041939
Target:  5'- aGGUGCGCU-GCuCGGCGGCgcgcgcccguuacaACGGCCu -3'
miRNA:   3'- gCCACGCGGuCG-GCCGCCGa-------------UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 24809 0.76 0.045966
Target:  5'- uCGGcgGCGCguauucggccuauaCGGCCGGCGGCaACGGCg -3'
miRNA:   3'- -GCCa-CGCG--------------GUCGGCCGCCGaUGCCGg -5'
24169 5' -64.2 NC_005263.2 + 24545 0.76 0.051782
Target:  5'- gCGGcgGCGCgGGCggCGGCGGCUGC-GCCa -3'
miRNA:   3'- -GCCa-CGCGgUCG--GCCGCCGAUGcCGG- -5'
24169 5' -64.2 NC_005263.2 + 18451 0.75 0.056257
Target:  5'- aGGUGCGCgugaagCAGCCGcGCGGCUGguacacccuuUGGCUg -3'
miRNA:   3'- gCCACGCG------GUCGGC-CGCCGAU----------GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 24701 0.75 0.057831
Target:  5'- gCGGcGCGCCGaacguGCCgGGCGGCgcagGCGGCa -3'
miRNA:   3'- -GCCaCGCGGU-----CGG-CCGCCGa---UGCCGg -5'
24169 5' -64.2 NC_005263.2 + 27376 0.75 0.057831
Target:  5'- gCGGcgcgGCGgCGGCCGGCGcGCUGacCGGCUg -3'
miRNA:   3'- -GCCa---CGCgGUCGGCCGC-CGAU--GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 38425 0.75 0.057831
Target:  5'- gGGUGCGCCGGCgugaCGcCGGCcACGGUCa -3'
miRNA:   3'- gCCACGCGGUCG----GCcGCCGaUGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 9357 0.75 0.064562
Target:  5'- uCGGUGaagGCgAgcGCCGGCGGCUGCGGg- -3'
miRNA:   3'- -GCCACg--CGgU--CGGCCGCCGAUGCCgg -5'
24169 5' -64.2 NC_005263.2 + 35542 0.74 0.068205
Target:  5'- gCGGcGCGCgGGCgGGC-GCUACGGCg -3'
miRNA:   3'- -GCCaCGCGgUCGgCCGcCGAUGCCGg -5'
24169 5' -64.2 NC_005263.2 + 44901 0.74 0.072046
Target:  5'- gCGG-GCGgCGGCCGGgcCGGCUcacCGGCCu -3'
miRNA:   3'- -GCCaCGCgGUCGGCC--GCCGAu--GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 27934 0.74 0.076094
Target:  5'- cCGGcGCGCUcucgucgaugAGCCGGaCGGCgcggAUGGCCc -3'
miRNA:   3'- -GCCaCGCGG----------UCGGCC-GCCGa---UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 3910 0.73 0.078199
Target:  5'- uGGUaGCGCCGGgCGGCaauGGCgGCaGGCCg -3'
miRNA:   3'- gCCA-CGCGGUCgGCCG---CCGaUG-CCGG- -5'
24169 5' -64.2 NC_005263.2 + 33973 0.73 0.085781
Target:  5'- gCGGccGCGCUGGCCGcuGCGGCUACGaucgcgacggcgaccGCCg -3'
miRNA:   3'- -GCCa-CGCGGUCGGC--CGCCGAUGC---------------CGG- -5'
24169 5' -64.2 NC_005263.2 + 29645 0.72 0.094569
Target:  5'- gGGUGUaCCAGCCGcGCGGCUGCuucacGCg -3'
miRNA:   3'- gCCACGcGGUCGGC-CGCCGAUGc----CGg -5'
24169 5' -64.2 NC_005263.2 + 26629 0.72 0.099813
Target:  5'- aCGGUGCGCCGgauuuGCCaGUGGCgccgcaGCGGUg -3'
miRNA:   3'- -GCCACGCGGU-----CGGcCGCCGa-----UGCCGg -5'
24169 5' -64.2 NC_005263.2 + 37712 0.72 0.102537
Target:  5'- cCGGacccgcuCGCCGGCCGGCccGGCgcgugGCGGCUc -3'
miRNA:   3'- -GCCac-----GCGGUCGGCCG--CCGa----UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 19096 0.72 0.105331
Target:  5'- gCGGUGCGCaacgcacuGCCGGuCGGCcGC-GCCg -3'
miRNA:   3'- -GCCACGCGgu------CGGCC-GCCGaUGcCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.