miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 5' -64.2 NC_005263.2 + 2638 0.69 0.173839
Target:  5'- gCGGUucaucGCGCUuGCCGGCGuaUcgGCGGCg -3'
miRNA:   3'- -GCCA-----CGCGGuCGGCCGCcgA--UGCCGg -5'
24169 5' -64.2 NC_005263.2 + 20413 0.7 0.152678
Target:  5'- gCGGc-CGCCGgcGCCGGCGcGCacaagaagGCGGCCg -3'
miRNA:   3'- -GCCacGCGGU--CGGCCGC-CGa-------UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 6788 0.72 0.108196
Target:  5'- uCGGUGaCGCCGGCgGGCGGCgucaAUuGCa -3'
miRNA:   3'- -GCCAC-GCGGUCGgCCGCCGa---UGcCGg -5'
24169 5' -64.2 NC_005263.2 + 38425 0.75 0.057831
Target:  5'- gGGUGCGCCGGCgugaCGcCGGCcACGGUCa -3'
miRNA:   3'- gCCACGCGGUCG----GCcGCCGaUGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 35828 0.68 0.213138
Target:  5'- cCGGgucgcuUGUGCCcugcaGGUCGGCaaaaaacaacGGCUGCGGCa -3'
miRNA:   3'- -GCC------ACGCGG-----UCGGCCG----------CCGAUGCCGg -5'
24169 5' -64.2 NC_005263.2 + 5012 0.68 0.187758
Target:  5'- aCGGUGCcuuccGCCgcgcucgacAGCCGGCccg-GCGGCCg -3'
miRNA:   3'- -GCCACG-----CGG---------UCGGCCGccgaUGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 26525 0.7 0.152678
Target:  5'- ---gGCGUCGacGCCGGCGGCgagcacGCGGCg -3'
miRNA:   3'- gccaCGCGGU--CGGCCGCCGa-----UGCCGg -5'
24169 5' -64.2 NC_005263.2 + 44118 0.77 0.041939
Target:  5'- aGGUGCGCU-GCuCGGCGGCgcgcgcccguuacaACGGCCu -3'
miRNA:   3'- gCCACGCGGuCG-GCCGCCGa-------------UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 13742 0.69 0.183012
Target:  5'- ---gGCGUUAccGCCGGCGGCca-GGCCg -3'
miRNA:   3'- gccaCGCGGU--CGGCCGCCGaugCCGG- -5'
24169 5' -64.2 NC_005263.2 + 10144 0.78 0.03509
Target:  5'- ---aGCGCCAGCCGGCgcGGCauCGGCCg -3'
miRNA:   3'- gccaCGCGGUCGGCCG--CCGauGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 46683 0.7 0.152678
Target:  5'- ---cGCGCgCAGCCaaGGCGGC-GCGcGCCg -3'
miRNA:   3'- gccaCGCG-GUCGG--CCGCCGaUGC-CGG- -5'
24169 5' -64.2 NC_005263.2 + 21137 0.69 0.175188
Target:  5'- uCGGcGCGCaGGacugcaguccgacacCCGGCGGCUACgccacggGGCCg -3'
miRNA:   3'- -GCCaCGCGgUC---------------GGCCGCCGAUG-------CCGG- -5'
24169 5' -64.2 NC_005263.2 + 18642 0.71 0.12365
Target:  5'- cCGG-GCGCC-GCUGGCGG-UACGcuGCCg -3'
miRNA:   3'- -GCCaCGCGGuCGGCCGCCgAUGC--CGG- -5'
24169 5' -64.2 NC_005263.2 + 20725 0.72 0.108196
Target:  5'- cCGGUcagcGCGCCGGCCGccgccGCGccGCUcgcugGCGGCCu -3'
miRNA:   3'- -GCCA----CGCGGUCGGC-----CGC--CGA-----UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 37712 0.72 0.102537
Target:  5'- cCGGacccgcuCGCCGGCCGGCccGGCgcgugGCGGCUc -3'
miRNA:   3'- -GCCac-----GCGGUCGGCCG--CCGa----UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 3910 0.73 0.078199
Target:  5'- uGGUaGCGCCGGgCGGCaauGGCgGCaGGCCg -3'
miRNA:   3'- gCCA-CGCGGUCgGCCG---CCGaUG-CCGG- -5'
24169 5' -64.2 NC_005263.2 + 20803 0.67 0.229742
Target:  5'- gGGUcGCGCCGugguauuucuGCagGcGCGGCU-CGGCCu -3'
miRNA:   3'- gCCA-CGCGGU----------CGg-C-CGCCGAuGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 22875 0.67 0.218555
Target:  5'- aCGGauuCGUCGGCCGGgauCGGC-ACGGCg -3'
miRNA:   3'- -GCCac-GCGGUCGGCC---GCCGaUGCCGg -5'
24169 5' -64.2 NC_005263.2 + 20954 0.68 0.202649
Target:  5'- aCGGccgcGCGCUGucggacaucGCCGacGCGGCUGCGcGCCu -3'
miRNA:   3'- -GCCa---CGCGGU---------CGGC--CGCCGAUGC-CGG- -5'
24169 5' -64.2 NC_005263.2 + 12549 0.68 0.197575
Target:  5'- ---cGCGgCGGCCGGCGGCgccguaGCGcCCg -3'
miRNA:   3'- gccaCGCgGUCGGCCGCCGa-----UGCcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.