Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24184 | 3' | -50.9 | NC_005263.2 | + | 18518 | 0.74 | 0.439861 |
Target: 5'- -cGCGAUCGGCgGCGUCGAcacCGCgaGCg -3' miRNA: 3'- aaCGCUAGCUG-UGCAGCUa--GCGaaUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 19111 | 0.66 | 0.865197 |
Target: 5'- cUGcCGGUCGGcCGCGcCGAgcgcaucgccgggCGCUUGCg -3' miRNA: 3'- aAC-GCUAGCU-GUGCaGCUa------------GCGAAUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 19620 | 0.66 | 0.876781 |
Target: 5'- -aGCGAacgccUCGuACGCGUUGAUgGCUg-- -3' miRNA: 3'- aaCGCU-----AGC-UGUGCAGCUAgCGAaug -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 19741 | 0.71 | 0.604353 |
Target: 5'- aUGCGAUCGGCGC-UgGcgCGCUgGCg -3' miRNA: 3'- aACGCUAGCUGUGcAgCuaGCGAaUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 20007 | 1.08 | 0.002484 |
Target: 5'- cUUGCGAUCGACACGUCGAUCGCUUACa -3' miRNA: 3'- -AACGCUAGCUGUGCAGCUAGCGAAUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 20779 | 0.7 | 0.696184 |
Target: 5'- -cGCGccgcugaucGUCGGCGCGUCgGGUCGCg--- -3' miRNA: 3'- aaCGC---------UAGCUGUGCAG-CUAGCGaaug -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 23406 | 0.66 | 0.876781 |
Target: 5'- aUGCGAUUGcC-CGUCGAUcaacgCGCUcaUGCg -3' miRNA: 3'- aACGCUAGCuGuGCAGCUA-----GCGA--AUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 24408 | 0.66 | 0.899753 |
Target: 5'- gUGCGGUC---AUGUCGAUCGCcucACg -3' miRNA: 3'- aACGCUAGcugUGCAGCUAGCGaa-UG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 25167 | 0.69 | 0.751758 |
Target: 5'- -cGUGAUCGACuCGcCGGUCGgaUUUGCg -3' miRNA: 3'- aaCGCUAGCUGuGCaGCUAGC--GAAUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 26040 | 0.66 | 0.884723 |
Target: 5'- -gGCGGUUGAgCuCGUCGAgcuUCGC-UGCg -3' miRNA: 3'- aaCGCUAGCU-GuGCAGCU---AGCGaAUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 28100 | 0.84 | 0.107441 |
Target: 5'- -aGCGAUCGACGUGUCGAUCGCaagUGCc -3' miRNA: 3'- aaCGCUAGCUGUGCAGCUAGCGa--AUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 28248 | 0.66 | 0.897572 |
Target: 5'- -cGCGcUCGccgugaccuuguucGCAuCGUCGAUCGCgcGCg -3' miRNA: 3'- aaCGCuAGC--------------UGU-GCAGCUAGCGaaUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 29589 | 0.71 | 0.604353 |
Target: 5'- -cGCGGugUCGACGcCGcCGAUCGCgagGCg -3' miRNA: 3'- aaCGCU--AGCUGU-GCaGCUAGCGaa-UG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 30208 | 0.66 | 0.876781 |
Target: 5'- aUGCuGAUCGGCGCGccgcCGGUCGaCUg-- -3' miRNA: 3'- aACG-CUAGCUGUGCa---GCUAGC-GAaug -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 30613 | 0.67 | 0.851322 |
Target: 5'- --uCGAUCGACGCGcCGcgCGCg--- -3' miRNA: 3'- aacGCUAGCUGUGCaGCuaGCGaaug -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 31289 | 0.69 | 0.729837 |
Target: 5'- -cGCG-UCGAgCGCGUCGA-CGCUaGCc -3' miRNA: 3'- aaCGCuAGCU-GUGCAGCUaGCGAaUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 32539 | 0.66 | 0.899753 |
Target: 5'- -gGCGAcugUCGGCAgGcCGGccacgCGCUUACu -3' miRNA: 3'- aaCGCU---AGCUGUgCaGCUa----GCGAAUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 32890 | 0.68 | 0.762525 |
Target: 5'- -gGCGAguuUCGugGCGUCGG-CGUcgGCg -3' miRNA: 3'- aaCGCU---AGCugUGCAGCUaGCGaaUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 33810 | 0.66 | 0.899753 |
Target: 5'- -aGCGucgaCGGCAUGaCGAUCGCgcUGCa -3' miRNA: 3'- aaCGCua--GCUGUGCaGCUAGCGa-AUG- -5' |
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24184 | 3' | -50.9 | NC_005263.2 | + | 33903 | 0.66 | 0.884723 |
Target: 5'- -cGCGAaCGGCACGcCG-UCGCggaACg -3' miRNA: 3'- aaCGCUaGCUGUGCaGCuAGCGaa-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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