miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24184 3' -50.9 NC_005263.2 + 971 0.7 0.650419
Target:  5'- -gGCGGUCGccuGCGCGUCGGacggCGCUUc- -3'
miRNA:   3'- aaCGCUAGC---UGUGCAGCUa---GCGAAug -5'
24184 3' -50.9 NC_005263.2 + 2639 0.71 0.615858
Target:  5'- -cGCGAUCGGCACGUUcg-CGCcggGCu -3'
miRNA:   3'- aaCGCUAGCUGUGCAGcuaGCGaa-UG- -5'
24184 3' -50.9 NC_005263.2 + 5459 0.72 0.581434
Target:  5'- -aGCGAUCGGuugcCACGUCGG-CGCUg-- -3'
miRNA:   3'- aaCGCUAGCU----GUGCAGCUaGCGAaug -5'
24184 3' -50.9 NC_005263.2 + 5857 0.67 0.833076
Target:  5'- gUGCGGUCGAa--GUCGAgcCGCagGCg -3'
miRNA:   3'- aACGCUAGCUgugCAGCUa-GCGaaUG- -5'
24184 3' -50.9 NC_005263.2 + 6257 0.66 0.876781
Target:  5'- -cGCGGUCGuGC-CGUCGGgcaGCUUGa -3'
miRNA:   3'- aaCGCUAGC-UGuGCAGCUag-CGAAUg -5'
24184 3' -50.9 NC_005263.2 + 6632 0.82 0.143579
Target:  5'- -cGCGGUCGagcagucGCGCGUCGGUCGCUUcACg -3'
miRNA:   3'- aaCGCUAGC-------UGUGCAGCUAGCGAA-UG- -5'
24184 3' -50.9 NC_005263.2 + 7378 0.66 0.892383
Target:  5'- -gGCGAUCGGguUGguguucuuugCGGUCGCgagUGCg -3'
miRNA:   3'- aaCGCUAGCUguGCa---------GCUAGCGa--AUG- -5'
24184 3' -50.9 NC_005263.2 + 7416 0.7 0.650419
Target:  5'- aUGCGGgagaUCGGCGCGUCGAgcagguagCGCa--- -3'
miRNA:   3'- aACGCU----AGCUGUGCAGCUa-------GCGaaug -5'
24184 3' -50.9 NC_005263.2 + 8705 0.68 0.803998
Target:  5'- gUGCGG-CGACAgGUCGGccgcguccaUCGCgUACu -3'
miRNA:   3'- aACGCUaGCUGUgCAGCU---------AGCGaAUG- -5'
24184 3' -50.9 NC_005263.2 + 9596 0.71 0.638902
Target:  5'- -gGCGAccugCGACACGUCGA-CGCcgaucUGCg -3'
miRNA:   3'- aaCGCUa---GCUGUGCAGCUaGCGa----AUG- -5'
24184 3' -50.9 NC_005263.2 + 9728 0.66 0.860072
Target:  5'- cUUGCGcUCGuucgccacaGCAgUGUCGAUCGCggUGCg -3'
miRNA:   3'- -AACGCuAGC---------UGU-GCAGCUAGCGa-AUG- -5'
24184 3' -50.9 NC_005263.2 + 9766 0.66 0.884723
Target:  5'- -cGcCGGUCGcCGCGUgcaCGGUCGCgcGCg -3'
miRNA:   3'- aaC-GCUAGCuGUGCA---GCUAGCGaaUG- -5'
24184 3' -50.9 NC_005263.2 + 12680 0.66 0.899753
Target:  5'- -cGgGGUCGucguuCGCGUCGA--GCUUGCc -3'
miRNA:   3'- aaCgCUAGCu----GUGCAGCUagCGAAUG- -5'
24184 3' -50.9 NC_005263.2 + 13192 0.72 0.547422
Target:  5'- -cGCGcAUCGACAgGUCGAcauUCGCgccagGCg -3'
miRNA:   3'- aaCGC-UAGCUGUgCAGCU---AGCGaa---UG- -5'
24184 3' -50.9 NC_005263.2 + 14298 0.67 0.833076
Target:  5'- -cGCGAUCGuCAugcCGUCGA-CGCUa-- -3'
miRNA:   3'- aaCGCUAGCuGU---GCAGCUaGCGAaug -5'
24184 3' -50.9 NC_005263.2 + 15339 0.77 0.320016
Target:  5'- --aUGAUCGACuuuGCGUCGGUCGCaUUGCg -3'
miRNA:   3'- aacGCUAGCUG---UGCAGCUAGCG-AAUG- -5'
24184 3' -50.9 NC_005263.2 + 15658 0.66 0.860072
Target:  5'- -cGCGAUCGuCGCGUCGGacacguucuuUcCGCUgACc -3'
miRNA:   3'- aaCGCUAGCuGUGCAGCU----------A-GCGAaUG- -5'
24184 3' -50.9 NC_005263.2 + 15991 0.69 0.740858
Target:  5'- -cGUGAUCGAUcucgaaGCGcUCGAUCGCa--- -3'
miRNA:   3'- aaCGCUAGCUG------UGC-AGCUAGCGaaug -5'
24184 3' -50.9 NC_005263.2 + 16807 0.67 0.833076
Target:  5'- gUUGCGAUgaaGGCuaGCGUCGAcgCGCUcgACg -3'
miRNA:   3'- -AACGCUAg--CUG--UGCAGCUa-GCGAa-UG- -5'
24184 3' -50.9 NC_005263.2 + 17498 0.78 0.25243
Target:  5'- -cGCGcgCGGCGCGUCGAUCGaucagGCg -3'
miRNA:   3'- aaCGCuaGCUGUGCAGCUAGCgaa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.