miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24184 3' -50.9 NC_005263.2 + 20007 1.08 0.002484
Target:  5'- cUUGCGAUCGACACGUCGAUCGCUUACa -3'
miRNA:   3'- -AACGCUAGCUGUGCAGCUAGCGAAUG- -5'
24184 3' -50.9 NC_005263.2 + 28100 0.84 0.107441
Target:  5'- -aGCGAUCGACGUGUCGAUCGCaagUGCc -3'
miRNA:   3'- aaCGCUAGCUGUGCAGCUAGCGa--AUG- -5'
24184 3' -50.9 NC_005263.2 + 6632 0.82 0.143579
Target:  5'- -cGCGGUCGagcagucGCGCGUCGGUCGCUUcACg -3'
miRNA:   3'- aaCGCUAGC-------UGUGCAGCUAGCGAA-UG- -5'
24184 3' -50.9 NC_005263.2 + 17498 0.78 0.25243
Target:  5'- -cGCGcgCGGCGCGUCGAUCGaucagGCg -3'
miRNA:   3'- aaCGCuaGCUGUGCAGCUAGCgaa--UG- -5'
24184 3' -50.9 NC_005263.2 + 38565 0.77 0.296079
Target:  5'- -cGCGAgCGcCGCGUCGGUCGCUgccGCg -3'
miRNA:   3'- aaCGCUaGCuGUGCAGCUAGCGAa--UG- -5'
24184 3' -50.9 NC_005263.2 + 15339 0.77 0.320016
Target:  5'- --aUGAUCGACuuuGCGUCGGUCGCaUUGCg -3'
miRNA:   3'- aacGCUAGCUG---UGCAGCUAGCG-AAUG- -5'
24184 3' -50.9 NC_005263.2 + 18518 0.74 0.439861
Target:  5'- -cGCGAUCGGCgGCGUCGAcacCGCgaGCg -3'
miRNA:   3'- aaCGCUAGCUG-UGCAGCUa--GCGaaUG- -5'
24184 3' -50.9 NC_005263.2 + 13192 0.72 0.547422
Target:  5'- -cGCGcAUCGACAgGUCGAcauUCGCgccagGCg -3'
miRNA:   3'- aaCGC-UAGCUGUgCAGCU---AGCGaa---UG- -5'
24184 3' -50.9 NC_005263.2 + 5459 0.72 0.581434
Target:  5'- -aGCGAUCGGuugcCACGUCGG-CGCUg-- -3'
miRNA:   3'- aaCGCUAGCU----GUGCAGCUaGCGAaug -5'
24184 3' -50.9 NC_005263.2 + 19741 0.71 0.604353
Target:  5'- aUGCGAUCGGCGC-UgGcgCGCUgGCg -3'
miRNA:   3'- aACGCUAGCUGUGcAgCuaGCGAaUG- -5'
24184 3' -50.9 NC_005263.2 + 29589 0.71 0.604353
Target:  5'- -cGCGGugUCGACGcCGcCGAUCGCgagGCg -3'
miRNA:   3'- aaCGCU--AGCUGU-GCaGCUAGCGaa-UG- -5'
24184 3' -50.9 NC_005263.2 + 2639 0.71 0.615858
Target:  5'- -cGCGAUCGGCACGUUcg-CGCcggGCu -3'
miRNA:   3'- aaCGCUAGCUGUGCAGcuaGCGaa-UG- -5'
24184 3' -50.9 NC_005263.2 + 9596 0.71 0.638902
Target:  5'- -gGCGAccugCGACACGUCGA-CGCcgaucUGCg -3'
miRNA:   3'- aaCGCUa---GCUGUGCAGCUaGCGa----AUG- -5'
24184 3' -50.9 NC_005263.2 + 7416 0.7 0.650419
Target:  5'- aUGCGGgagaUCGGCGCGUCGAgcagguagCGCa--- -3'
miRNA:   3'- aACGCU----AGCUGUGCAGCUa-------GCGaaug -5'
24184 3' -50.9 NC_005263.2 + 971 0.7 0.650419
Target:  5'- -gGCGGUCGccuGCGCGUCGGacggCGCUUc- -3'
miRNA:   3'- aaCGCUAGC---UGUGCAGCUa---GCGAAug -5'
24184 3' -50.9 NC_005263.2 + 42758 0.7 0.673387
Target:  5'- -cGCGAUaCGGCACGUgGuuUCGCggUGCu -3'
miRNA:   3'- aaCGCUA-GCUGUGCAgCu-AGCGa-AUG- -5'
24184 3' -50.9 NC_005263.2 + 20779 0.7 0.696184
Target:  5'- -cGCGccgcugaucGUCGGCGCGUCgGGUCGCg--- -3'
miRNA:   3'- aaCGC---------UAGCUGUGCAG-CUAGCGaaug -5'
24184 3' -50.9 NC_005263.2 + 41173 0.69 0.718709
Target:  5'- -gGCGGccgucgUCGAUACGUUGcgCGCUgUGCg -3'
miRNA:   3'- aaCGCU------AGCUGUGCAGCuaGCGA-AUG- -5'
24184 3' -50.9 NC_005263.2 + 43252 0.69 0.729837
Target:  5'- -aGCGGcaUCGGCACGgCGcgCGCgUACg -3'
miRNA:   3'- aaCGCU--AGCUGUGCaGCuaGCGaAUG- -5'
24184 3' -50.9 NC_005263.2 + 31289 0.69 0.729837
Target:  5'- -cGCG-UCGAgCGCGUCGA-CGCUaGCc -3'
miRNA:   3'- aaCGCuAGCU-GUGCAGCUaGCGAaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.