miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24184 3' -50.9 NC_005263.2 + 28100 0.84 0.107441
Target:  5'- -aGCGAUCGACGUGUCGAUCGCaagUGCc -3'
miRNA:   3'- aaCGCUAGCUGUGCAGCUAGCGa--AUG- -5'
24184 3' -50.9 NC_005263.2 + 30613 0.67 0.851322
Target:  5'- --uCGAUCGACGCGcCGcgCGCg--- -3'
miRNA:   3'- aacGCUAGCUGUGCaGCuaGCGaaug -5'
24184 3' -50.9 NC_005263.2 + 19111 0.66 0.865197
Target:  5'- cUGcCGGUCGGcCGCGcCGAgcgcaucgccgggCGCUUGCg -3'
miRNA:   3'- aAC-GCUAGCU-GUGCaGCUa------------GCGAAUG- -5'
24184 3' -50.9 NC_005263.2 + 24408 0.66 0.899753
Target:  5'- gUGCGGUC---AUGUCGAUCGCcucACg -3'
miRNA:   3'- aACGCUAGcugUGCAGCUAGCGaa-UG- -5'
24184 3' -50.9 NC_005263.2 + 13192 0.72 0.547422
Target:  5'- -cGCGcAUCGACAgGUCGAcauUCGCgccagGCg -3'
miRNA:   3'- aaCGC-UAGCUGUgCAGCU---AGCGaa---UG- -5'
24184 3' -50.9 NC_005263.2 + 19741 0.71 0.604353
Target:  5'- aUGCGAUCGGCGC-UgGcgCGCUgGCg -3'
miRNA:   3'- aACGCUAGCUGUGcAgCuaGCGAaUG- -5'
24184 3' -50.9 NC_005263.2 + 7416 0.7 0.650419
Target:  5'- aUGCGGgagaUCGGCGCGUCGAgcagguagCGCa--- -3'
miRNA:   3'- aACGCU----AGCUGUGCAGCUa-------GCGaaug -5'
24184 3' -50.9 NC_005263.2 + 42758 0.7 0.673387
Target:  5'- -cGCGAUaCGGCACGUgGuuUCGCggUGCu -3'
miRNA:   3'- aaCGCUA-GCUGUGCAgCu-AGCGa-AUG- -5'
24184 3' -50.9 NC_005263.2 + 15991 0.69 0.740858
Target:  5'- -cGUGAUCGAUcucgaaGCGcUCGAUCGCa--- -3'
miRNA:   3'- aaCGCUAGCUG------UGC-AGCUAGCGaaug -5'
24184 3' -50.9 NC_005263.2 + 14298 0.67 0.833076
Target:  5'- -cGCGAUCGuCAugcCGUCGA-CGCUa-- -3'
miRNA:   3'- aaCGCUAGCuGU---GCAGCUaGCGAaug -5'
24184 3' -50.9 NC_005263.2 + 25167 0.69 0.751758
Target:  5'- -cGUGAUCGACuCGcCGGUCGgaUUUGCg -3'
miRNA:   3'- aaCGCUAGCUGuGCaGCUAGC--GAAUG- -5'
24184 3' -50.9 NC_005263.2 + 31289 0.69 0.729837
Target:  5'- -cGCG-UCGAgCGCGUCGA-CGCUaGCc -3'
miRNA:   3'- aaCGCuAGCU-GUGCAGCUaGCGAaUG- -5'
24184 3' -50.9 NC_005263.2 + 6632 0.82 0.143579
Target:  5'- -cGCGGUCGagcagucGCGCGUCGGUCGCUUcACg -3'
miRNA:   3'- aaCGCUAGC-------UGUGCAGCUAGCGAA-UG- -5'
24184 3' -50.9 NC_005263.2 + 8705 0.68 0.803998
Target:  5'- gUGCGG-CGACAgGUCGGccgcguccaUCGCgUACu -3'
miRNA:   3'- aACGCUaGCUGUgCAGCU---------AGCGaAUG- -5'
24184 3' -50.9 NC_005263.2 + 15339 0.77 0.320016
Target:  5'- --aUGAUCGACuuuGCGUCGGUCGCaUUGCg -3'
miRNA:   3'- aacGCUAGCUG---UGCAGCUAGCG-AAUG- -5'
24184 3' -50.9 NC_005263.2 + 20779 0.7 0.696184
Target:  5'- -cGCGccgcugaucGUCGGCGCGUCgGGUCGCg--- -3'
miRNA:   3'- aaCGC---------UAGCUGUGCAG-CUAGCGaaug -5'
24184 3' -50.9 NC_005263.2 + 40977 0.67 0.8236
Target:  5'- -cGCGA-CGcCACaGUCGGUCGCacgGCa -3'
miRNA:   3'- aaCGCUaGCuGUG-CAGCUAGCGaa-UG- -5'
24184 3' -50.9 NC_005263.2 + 9728 0.66 0.860072
Target:  5'- cUUGCGcUCGuucgccacaGCAgUGUCGAUCGCggUGCg -3'
miRNA:   3'- -AACGCuAGC---------UGU-GCAGCUAGCGa-AUG- -5'
24184 3' -50.9 NC_005263.2 + 18518 0.74 0.439861
Target:  5'- -cGCGAUCGGCgGCGUCGAcacCGCgaGCg -3'
miRNA:   3'- aaCGCUAGCUG-UGCAGCUa--GCGaaUG- -5'
24184 3' -50.9 NC_005263.2 + 9596 0.71 0.638902
Target:  5'- -gGCGAccugCGACACGUCGA-CGCcgaucUGCg -3'
miRNA:   3'- aaCGCUa---GCUGUGCAGCUaGCGa----AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.