miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
242 3' -55.9 AC_000008.1 + 10527 0.66 0.574114
Target:  5'- cGCGacuUUcCGCGCGCcuccAC-CACCGCCGc -3'
miRNA:   3'- -UGCau-AA-GCGCGCGu---UGcGUGGCGGU- -5'
242 3' -55.9 AC_000008.1 + 11526 0.66 0.570756
Target:  5'- cACGUGUgCGCGCGCGGgacuaaucccgguuCGCG-CGUCGg -3'
miRNA:   3'- -UGCAUAaGCGCGCGUU--------------GCGUgGCGGU- -5'
242 3' -55.9 AC_000008.1 + 25330 0.66 0.551824
Target:  5'- aACGcagUCGCGgacguaguCGCGGCGCGCCucGCCc -3'
miRNA:   3'- -UGCauaAGCGC--------GCGUUGCGUGG--CGGu -5'
242 3' -55.9 AC_000008.1 + 26879 0.66 0.551824
Target:  5'- uACGgGUUCGUuggGCGCcaGACGCAgCGCUc -3'
miRNA:   3'- -UGCaUAAGCG---CGCG--UUGCGUgGCGGu -5'
242 3' -55.9 AC_000008.1 + 16047 0.66 0.529802
Target:  5'- cGCGgugGUggaggagGCGCGCAacuacACGCccacGCCGCCAc -3'
miRNA:   3'- -UGCa--UAag-----CGCGCGU-----UGCG----UGGCGGU- -5'
242 3' -55.9 AC_000008.1 + 16163 0.66 0.529802
Target:  5'- gGCGgaggCGCGUaGCAcguCGcCACCGCCGc -3'
miRNA:   3'- -UGCauaaGCGCG-CGUu--GC-GUGGCGGU- -5'
242 3' -55.9 AC_000008.1 + 12329 0.67 0.497407
Target:  5'- gGCGg---UGCGgGCGGCGCugCagaGCCAg -3'
miRNA:   3'- -UGCauaaGCGCgCGUUGCGugG---CGGU- -5'
242 3' -55.9 AC_000008.1 + 17452 0.67 0.486805
Target:  5'- gGCaUAUUCGgGCaGUAGCGCGCUGgCGg -3'
miRNA:   3'- -UGcAUAAGCgCG-CGUUGCGUGGCgGU- -5'
242 3' -55.9 AC_000008.1 + 6461 0.67 0.480495
Target:  5'- cGCGguuggCGCGUGCAccuggugcccgacgaGCGCACCaCCGu -3'
miRNA:   3'- -UGCauaa-GCGCGCGU---------------UGCGUGGcGGU- -5'
242 3' -55.9 AC_000008.1 + 18596 0.67 0.455668
Target:  5'- cCGUccuagcCGCGCGUcccugcgcCGCGCCGCCAg -3'
miRNA:   3'- uGCAuaa---GCGCGCGuu------GCGUGGCGGU- -5'
242 3' -55.9 AC_000008.1 + 12087 0.68 0.44553
Target:  5'- cGCGg--UCGCugaGCu-CGCGCCGCCGg -3'
miRNA:   3'- -UGCauaAGCGcg-CGuuGCGUGGCGGU- -5'
242 3' -55.9 AC_000008.1 + 12685 0.68 0.44553
Target:  5'- aGCGUGagCGCGCGCAGCaGCAggGCa- -3'
miRNA:   3'- -UGCAUaaGCGCGCGUUG-CGUggCGgu -5'
242 3' -55.9 AC_000008.1 + 18664 0.68 0.435518
Target:  5'- gGCGg---CGCgGCGCAgggACGCGCgGCUAg -3'
miRNA:   3'- -UGCauaaGCG-CGCGU---UGCGUGgCGGU- -5'
242 3' -55.9 AC_000008.1 + 17847 0.68 0.4227
Target:  5'- ------cCGcCGCGCAugcgacggugcgacGCGCGCCGCCGc -3'
miRNA:   3'- ugcauaaGC-GCGCGU--------------UGCGUGGCGGU- -5'
242 3' -55.9 AC_000008.1 + 33262 0.69 0.387494
Target:  5'- --uUAUUCGCGCGCugcuGCaGCACCaCCGc -3'
miRNA:   3'- ugcAUAAGCGCGCGu---UG-CGUGGcGGU- -5'
242 3' -55.9 AC_000008.1 + 12549 0.69 0.360401
Target:  5'- uGCGUgggGUUUGCGCGCGcCGggacCACCGCUu -3'
miRNA:   3'- -UGCA---UAAGCGCGCGUuGC----GUGGCGGu -5'
242 3' -55.9 AC_000008.1 + 21590 0.7 0.343087
Target:  5'- gACGUGgucCGUGUGCAccggcCGCACCGCg- -3'
miRNA:   3'- -UGCAUaa-GCGCGCGUu----GCGUGGCGgu -5'
242 3' -55.9 AC_000008.1 + 11471 0.7 0.343087
Target:  5'- -aGUcccgCGCGCGCAcACGUggcgGCCGCCGa -3'
miRNA:   3'- ugCAuaa-GCGCGCGU-UGCG----UGGCGGU- -5'
242 3' -55.9 AC_000008.1 + 23943 0.7 0.334658
Target:  5'- gACG---UCGCGCGCAcCGCGuCCGCg- -3'
miRNA:   3'- -UGCauaAGCGCGCGUuGCGU-GGCGgu -5'
242 3' -55.9 AC_000008.1 + 16414 0.7 0.318256
Target:  5'- aGCGgccugCGCGUGCccguGCGCACCcGCCc -3'
miRNA:   3'- -UGCauaa-GCGCGCGu---UGCGUGG-CGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.