miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24230 3' -50.2 NC_005263.2 + 653 1.13 0.001914
Target:  5'- cCCGUGAACGUGAAACGCAAGGCACGGu -3'
miRNA:   3'- -GGCACUUGCACUUUGCGUUCCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 32871 0.77 0.382797
Target:  5'- cUCGUcAGCGaGcuGCGCGAGGCGCGGg -3'
miRNA:   3'- -GGCAcUUGCaCuuUGCGUUCCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 28869 0.77 0.382797
Target:  5'- aCCGUGAcGCGcccgGAuGCGCAAGGCAaccaGGa -3'
miRNA:   3'- -GGCACU-UGCa---CUuUGCGUUCCGUg---CC- -5'
24230 3' -50.2 NC_005263.2 + 17895 0.75 0.491621
Target:  5'- uUCGcGAACGUGuccgcgacAGCGCcGGGCGCGGc -3'
miRNA:   3'- -GGCaCUUGCACu-------UUGCGuUCCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 17899 0.75 0.523759
Target:  5'- aCCGUGAACGgc--GCGCAGaucGGCGCGc -3'
miRNA:   3'- -GGCACUUGCacuuUGCGUU---CCGUGCc -5'
24230 3' -50.2 NC_005263.2 + 8493 0.74 0.56555
Target:  5'- aCGUGGACGcGAuggggcgAGCGCGAgcuggaaauggccGGCGCGGg -3'
miRNA:   3'- gGCACUUGCaCU-------UUGCGUU-------------CCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 29260 0.73 0.612666
Target:  5'- gCGUcGAGCGUGAc-CGCGcGGCACGa -3'
miRNA:   3'- gGCA-CUUGCACUuuGCGUuCCGUGCc -5'
24230 3' -50.2 NC_005263.2 + 12601 0.73 0.628477
Target:  5'- gCCGcGAACGUGAAugcgaacgccaacccGCGCGAagccGGCGCGc -3'
miRNA:   3'- -GGCaCUUGCACUU---------------UGCGUU----CCGUGCc -5'
24230 3' -50.2 NC_005263.2 + 27232 0.72 0.657835
Target:  5'- cUCGUGAGCGUGAu-CGCGccGC-CGGc -3'
miRNA:   3'- -GGCACUUGCACUuuGCGUucCGuGCC- -5'
24230 3' -50.2 NC_005263.2 + 16162 0.72 0.684787
Target:  5'- aCUGUGGGCGgcGAGCGCAaauggaacgaucgcgGcGGCACGGa -3'
miRNA:   3'- -GGCACUUGCacUUUGCGU---------------U-CCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 21183 0.71 0.72459
Target:  5'- gCCG-GAcGCG-GAcGCGCGcGGCGCGGg -3'
miRNA:   3'- -GGCaCU-UGCaCUuUGCGUuCCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 41365 0.71 0.746196
Target:  5'- gCGaUGGACGUGAcGCGCGAGuguGUACGu -3'
miRNA:   3'- gGC-ACUUGCACUuUGCGUUC---CGUGCc -5'
24230 3' -50.2 NC_005263.2 + 34629 0.71 0.746196
Target:  5'- aCCGUGGcuGCGccaaaUGAuACGCAGGGUGCu- -3'
miRNA:   3'- -GGCACU--UGC-----ACUuUGCGUUCCGUGcc -5'
24230 3' -50.2 NC_005263.2 + 31010 0.7 0.777661
Target:  5'- aUCGUGcAGCaGUGcg--GCGAGGCGCGGc -3'
miRNA:   3'- -GGCAC-UUG-CACuuugCGUUCCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 19746 0.69 0.807697
Target:  5'- gCGUGAACGU----CGCGGGcaGCGCGGc -3'
miRNA:   3'- gGCACUUGCAcuuuGCGUUC--CGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 23951 0.69 0.817337
Target:  5'- gUCGUGAGCGUGAcggugccaccCGUcAGGC-CGGu -3'
miRNA:   3'- -GGCACUUGCACUuu--------GCGuUCCGuGCC- -5'
24230 3' -50.2 NC_005263.2 + 4939 0.69 0.826771
Target:  5'- -gGUGAGCGgcgGcAGCgGCAucGGCACGGc -3'
miRNA:   3'- ggCACUUGCa--CuUUG-CGUu-CCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 38650 0.69 0.844982
Target:  5'- gCCGUGAGCGcgucgGAcggcAACGCGucGCACaGGu -3'
miRNA:   3'- -GGCACUUGCa----CU----UUGCGUucCGUG-CC- -5'
24230 3' -50.2 NC_005263.2 + 28818 0.69 0.844982
Target:  5'- aCgGUGAcCGUGAcGCGCAcgcGGCGCu- -3'
miRNA:   3'- -GgCACUuGCACUuUGCGUu--CCGUGcc -5'
24230 3' -50.2 NC_005263.2 + 5404 0.68 0.862252
Target:  5'- aCGgcGGCGUGAcgauccAGCGCgAAGGCGCGa -3'
miRNA:   3'- gGCacUUGCACU------UUGCG-UUCCGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.