miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24230 3' -50.2 NC_005263.2 + 653 1.13 0.001914
Target:  5'- cCCGUGAACGUGAAACGCAAGGCACGGu -3'
miRNA:   3'- -GGCACUUGCACUUUGCGUUCCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 1209 0.66 0.947933
Target:  5'- gCgGUGcAACGccguGCGCAGcacGGCGCGGa -3'
miRNA:   3'- -GgCAC-UUGCacuuUGCGUU---CCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 3795 0.66 0.947933
Target:  5'- uCCGgcccGGCGU---GCGCGAGGCGCu- -3'
miRNA:   3'- -GGCac--UUGCAcuuUGCGUUCCGUGcc -5'
24230 3' -50.2 NC_005263.2 + 4939 0.69 0.826771
Target:  5'- -gGUGAGCGgcgGcAGCgGCAucGGCACGGc -3'
miRNA:   3'- ggCACUUGCa--CuUUG-CGUu-CCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 5255 0.67 0.893699
Target:  5'- gCCGggucGAACGUGA--UGC--GGUACGGg -3'
miRNA:   3'- -GGCa---CUUGCACUuuGCGuuCCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 5404 0.68 0.862252
Target:  5'- aCGgcGGCGUGAcgauccAGCGCgAAGGCGCGa -3'
miRNA:   3'- gGCacUUGCACU------UUGCG-UUCCGUGCc -5'
24230 3' -50.2 NC_005263.2 + 8493 0.74 0.56555
Target:  5'- aCGUGGACGcGAuggggcgAGCGCGAgcuggaaauggccGGCGCGGg -3'
miRNA:   3'- gGCACUUGCaCU-------UUGCGUU-------------CCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 12601 0.73 0.628477
Target:  5'- gCCGcGAACGUGAAugcgaacgccaacccGCGCGAagccGGCGCGc -3'
miRNA:   3'- -GGCaCUUGCACUU---------------UGCGUU----CCGUGCc -5'
24230 3' -50.2 NC_005263.2 + 13222 0.66 0.937909
Target:  5'- gCGUGAGCGccu-GCGCGAGGUcCa- -3'
miRNA:   3'- gGCACUUGCacuuUGCGUUCCGuGcc -5'
24230 3' -50.2 NC_005263.2 + 14007 0.68 0.87851
Target:  5'- ---cGAAC-UGAcGCGCGAGGCGCa- -3'
miRNA:   3'- ggcaCUUGcACUuUGCGUUCCGUGcc -5'
24230 3' -50.2 NC_005263.2 + 16162 0.72 0.684787
Target:  5'- aCUGUGGGCGgcGAGCGCAaauggaacgaucgcgGcGGCACGGa -3'
miRNA:   3'- -GGCACUUGCacUUUGCGU---------------U-CCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 17895 0.75 0.491621
Target:  5'- uUCGcGAACGUGuccgcgacAGCGCcGGGCGCGGc -3'
miRNA:   3'- -GGCaCUUGCACu-------UUGCGuUCCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 17899 0.75 0.523759
Target:  5'- aCCGUGAACGgc--GCGCAGaucGGCGCGc -3'
miRNA:   3'- -GGCACUUGCacuuUGCGUU---CCGUGCc -5'
24230 3' -50.2 NC_005263.2 + 19156 0.68 0.87851
Target:  5'- gUCGUGAcCGUGcAucCGCc-GGCGCGGc -3'
miRNA:   3'- -GGCACUuGCAC-UuuGCGuuCCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 19746 0.69 0.807697
Target:  5'- gCGUGAACGU----CGCGGGcaGCGCGGc -3'
miRNA:   3'- gGCACUUGCAcuuuGCGUUC--CGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 21183 0.71 0.72459
Target:  5'- gCCG-GAcGCG-GAcGCGCGcGGCGCGGg -3'
miRNA:   3'- -GGCaCU-UGCaCUuUGCGUuCCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 21380 0.66 0.931903
Target:  5'- aCGUGAugGUGcgcuuCGCGcugccgcAGGC-CGGc -3'
miRNA:   3'- gGCACUugCACuuu--GCGU-------UCCGuGCC- -5'
24230 3' -50.2 NC_005263.2 + 23951 0.69 0.817337
Target:  5'- gUCGUGAGCGUGAcggugccaccCGUcAGGC-CGGu -3'
miRNA:   3'- -GGCACUUGCACUuu--------GCGuUCCGuGCC- -5'
24230 3' -50.2 NC_005263.2 + 27232 0.72 0.657835
Target:  5'- cUCGUGAGCGUGAu-CGCGccGC-CGGc -3'
miRNA:   3'- -GGCACUUGCACUuuGCGUucCGuGCC- -5'
24230 3' -50.2 NC_005263.2 + 27705 0.66 0.926727
Target:  5'- uUCGUGAaauuGCGccucGAAugGCGAGuuGUACGGu -3'
miRNA:   3'- -GGCACU----UGCa---CUUugCGUUC--CGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.