miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24230 5' -59.6 NC_005263.2 + 333 0.66 0.461043
Target:  5'- gCUCGGUG-GCGUGAcgaccacaUCGaacgGUaCGCCGUg -3'
miRNA:   3'- -GAGCCACuCGCGCU--------AGCa---CG-GCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 690 1.1 0.00031
Target:  5'- gCUCGGUGAGCGCGAUCGUGCCGCCGCc -3'
miRNA:   3'- -GAGCCACUCGCGCUAGCACGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 1794 0.66 0.445665
Target:  5'- -aCGGcguucGAGC-CGAUCGUcaguuccuggaugcuGCCGCCGUc -3'
miRNA:   3'- gaGCCa----CUCGcGCUAGCA---------------CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 2000 0.7 0.284936
Target:  5'- -cCGGUGccGGCGCGcUCGUGCagacgCGCgGCu -3'
miRNA:   3'- gaGCCAC--UCGCGCuAGCACG-----GCGgCG- -5'
24230 5' -59.6 NC_005263.2 + 2696 0.66 0.480652
Target:  5'- -gCGaUGAaccGCGCGGUCG-GCCuGUCGCg -3'
miRNA:   3'- gaGCcACU---CGCGCUAGCaCGG-CGGCG- -5'
24230 5' -59.6 NC_005263.2 + 3202 0.68 0.369969
Target:  5'- -cCGGUGAGC-CGGccCG-GCgCGCCGCc -3'
miRNA:   3'- gaGCCACUCGcGCUa-GCaCG-GCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 4793 0.66 0.470796
Target:  5'- --gGGUGAGCccGCGucgCGUGacgcucauaCGCCGCc -3'
miRNA:   3'- gagCCACUCG--CGCua-GCACg--------GCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 5315 0.66 0.480652
Target:  5'- uUCGGgucuuucGCGCcuucgcgcugGAUCGUcacGCCGCCGUg -3'
miRNA:   3'- gAGCCacu----CGCG----------CUAGCA---CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 6378 0.69 0.321546
Target:  5'- aUCGGUu-GCGCG-UCGUGCCGUaggGUa -3'
miRNA:   3'- gAGCCAcuCGCGCuAGCACGGCGg--CG- -5'
24230 5' -59.6 NC_005263.2 + 8737 0.68 0.353288
Target:  5'- aCUCGGcGAGCGgGGUCGaGacguuuuuaaCGCUGCg -3'
miRNA:   3'- -GAGCCaCUCGCgCUAGCaCg---------GCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 9222 0.67 0.413968
Target:  5'- -aCGGUGccgucggcguucAGCacgGCGAaCGUGCCGaCCGUg -3'
miRNA:   3'- gaGCCAC------------UCG---CGCUaGCACGGC-GGCG- -5'
24230 5' -59.6 NC_005263.2 + 9507 0.69 0.329278
Target:  5'- aUCGcGUGcGCGgGcugaAUCGUGCgGCCGUg -3'
miRNA:   3'- gAGC-CACuCGCgC----UAGCACGgCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 9820 0.69 0.321546
Target:  5'- gUCGGUGcGCaccGCGAUCGacacUGCUGUgGCg -3'
miRNA:   3'- gAGCCACuCG---CGCUAGC----ACGGCGgCG- -5'
24230 5' -59.6 NC_005263.2 + 12063 0.68 0.37851
Target:  5'- gUCGGUcgaccgagacGGGCGCGAguacCuUGUCGUCGCg -3'
miRNA:   3'- gAGCCA----------CUCGCGCUa---GcACGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 12629 0.66 0.480652
Target:  5'- -gCGGgcGGGCGCuacggCGccgccgGCCGCCGCg -3'
miRNA:   3'- gaGCCa-CUCGCGcua--GCa-----CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 14092 0.67 0.432447
Target:  5'- gUCGGcUGGuaccggcuGCGCGG-CGgucGCCGUCGCg -3'
miRNA:   3'- gAGCC-ACU--------CGCGCUaGCa--CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 14180 0.67 0.413968
Target:  5'- -cCGGUGuGCGCGAgcugCGUG-CGCUucuuuGCg -3'
miRNA:   3'- gaGCCACuCGCGCUa---GCACgGCGG-----CG- -5'
24230 5' -59.6 NC_005263.2 + 14289 0.66 0.461043
Target:  5'- -cUGaUGcAGCGCGAUCGUcauGCCGUCGa -3'
miRNA:   3'- gaGCcAC-UCGCGCUAGCA---CGGCGGCg -5'
24230 5' -59.6 NC_005263.2 + 14519 0.68 0.345149
Target:  5'- gCUCGGcucgaaagaGGCGCGcgCGcacGCCGUCGCa -3'
miRNA:   3'- -GAGCCac-------UCGCGCuaGCa--CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 16000 0.67 0.432447
Target:  5'- uCUCGa--AGCGCucGAUCGcaccgacGCCGCCGCa -3'
miRNA:   3'- -GAGCcacUCGCG--CUAGCa------CGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.